github.com/ag-computational-bio/bioprotobufparser

BioProtobufParser

This tool parses Gbff and FASTA files and converts them to a protocol buffer representation. The corresponding protobuf files and schemas can be found here.

Usage

1. The first need Go installed (version 1.14+ is required), then you can use the below Go command to install BioProtobufParser.

$ go get -u github.com/ag-computational-bio/BioProtobufParser

1. Import it in your code:

import "github.com/ag-computational-bio/BioProtobufParser"

Quick Start

For

package main

import (

"github.com/ag-computational-bio/BioProtobufParser/gbparse"
schemas "github.com/ag-computational-bio/BioProtobufSchemas/go"

)

func main() {
    parser := gbparse.FASTAParser{}
    
    output := make(chan *schemas.Fasta)

    file := bufio.
    parser.Rea

}