@gmod/bbi - npm Package Compare versions

Comparing version 4.0.2 to 4.0.3

CHANGELOG.md

@@ -1,5 +0,14 @@
-## [4.0.2](https://github.com/GMOD/bbi-js/compare/v4.0.1...v4.0.2) (2023-07-30)
+## [4.0.3](https://github.com/GMOD/bbi-js/compare/v4.0.2...v4.0.3) (2024-01-16)
 
 
+### Performance Improvements
 
+* optimize `parseBigBedBlock` ([#58](https://github.com/GMOD/bbi-js/issues/58)) ([eb3f7a4](https://github.com/GMOD/bbi-js/commit/eb3f7a4885c4e8262c6e3e63696b533e53072463))
+
+
+
+- Small perf improvement (#58)
+
+## [4.0.2](https://github.com/GMOD/bbi-js/compare/v4.0.1...v4.0.2) (2023-07-30)
+
 - Fix issue with fetching headers that are large in certain cases
@@ -6,0 +15,0 @@

dist/block-view.js

@@ -291,3 +291,4 @@ "use strict";
             const res = this.bigBedParser.parse(data.subarray(currOffset));
-            items.push(Object.assign(Object.assign({}, res), { uniqueId: `bb-${offset + currOffset}` }));
+            res.uniqueId = `bb-${offset + currOffset}`;
+            items.push(res);
             currOffset += res.offset;
@@ -294,0 +295,0 @@ }

dist/unzip.d.ts

@@ -0,1 +1,2 @@
+/// <reference types="node" />
 export { inflateSync as unzip } from 'zlib';

dist/util.js

@@ -13,3 +13,2 @@ "use strict";
 exports.abortBreakPoint = exports.checkAbortSignal = exports.groupBlocks = exports.AbortError = void 0;
-/* eslint no-bitwise: ["error", { "allow": ["|"] }] */
 class AbortError extends Error {
@@ -16,0 +15,0 @@ constructor(message) {

esm/block-view.js

@@ -274,3 +274,4 @@ import { Buffer } from 'buffer';
             const res = this.bigBedParser.parse(data.subarray(currOffset));
-            items.push({ ...res, uniqueId: `bb-${offset + currOffset}` });
+            res.uniqueId = `bb-${offset + currOffset}`;
+            items.push(res);
             currOffset += res.offset;
@@ -277,0 +278,0 @@ }

esm/unzip.d.ts

@@ -0,1 +1,2 @@
+/// <reference types="node" />
 export { inflateSync as unzip } from 'zlib';

esm/util.js

@@ -1,2 +0,1 @@
-/* eslint no-bitwise: ["error", { "allow": ["|"] }] */
 export class AbortError extends Error {
@@ -3,0 +2,0 @@ constructor(message) {

package.json

 {
   "name": "@gmod/bbi",
-  "version": "4.0.2",
+  "version": "4.0.3",
   "description": "Parser for BigWig/BigBed files",
@@ -26,2 +26,3 @@ "license": "MIT",
     "lint": "eslint --report-unused-disable-directives --max-warnings 0 --ext .js,.ts src",
+    "format": "prettier",
     "clean": "rimraf dist esm",
@@ -54,20 +55,18 @@ "prebuild": "npm run clean",
     "@gmod/bed": "^2.1.2",
-    "@types/jest": "^29.5.0",
-    "@types/long": "^5.0.0",
-    "@types/node": "^18.15.7",
+    "@types/jest": "^29.5.3",
+    "@types/node": "^20.4.5",
     "@types/pako": "^2.0.0",
-    "@typescript-eslint/eslint-plugin": "^5.56.0",
-    "@typescript-eslint/parser": "^5.56.0",
-    "eslint": "^8.36.0",
-    "eslint-config-prettier": "^8.8.0",
-    "eslint-plugin-import": "^2.27.5",
-    "eslint-plugin-prettier": "^4.0.0",
-    "eslint-plugin-unicorn": "^46.0.0",
-    "jest": "^29.5.0",
-    "jest-environment-jsdom": "^29.5.0",
-    "prettier": "^2.8.7",
-    "rimraf": "^5.0.0",
-    "standard-changelog": "^2.0.11",
-    "ts-jest": "^29.0.5",
-    "typescript": "^5.0.2"
+    "@typescript-eslint/eslint-plugin": "^6.2.0",
+    "@typescript-eslint/parser": "^6.2.0",
+    "eslint": "^8.46.0",
+    "eslint-config-prettier": "^9.1.0",
+    "eslint-plugin-prettier": "^5.1.3",
+    "eslint-plugin-unicorn": "^50.0.1",
+    "jest": "^29.6.2",
+    "jest-environment-jsdom": "^29.6.2",
+    "prettier": "^3.0.0",
+    "rimraf": "^5.0.1",
+    "standard-changelog": "^3.0.0",
+    "ts-jest": "^29.1.1",
+    "typescript": "^5.1.6"
   },
@@ -74,0 +73,0 @@ "publishConfig": {

README.md

@@ -167,3 +167,3 @@ # bbi-js
 ```typescript
-import {BigBed} from '@gmod/bbi'
+import { BigBed } from '@gmod/bbi'
 import BED from '@gmod/bed'
@@ -174,8 +174,8 @@
 })
-const {autoSql} = await ti.getHeader()
+const { autoSql } = await ti.getHeader()
 const feats = await ti.getFeatures('chr7', 0, 100000)
-const parser = new BED({autoSql})
+const parser = new BED({ autoSql })
 const lines = feats.map(f => {
-    const { start, end, rest, uniqueId } = f
-    return parser.parseLine(`chr7\t${start}\t${end}\t${rest}, { uniqueId })\
+  const { start, end, rest, uniqueId } = f
+  return parser.parseLine(`chr7\t${start}\t${end}\t${rest}`, { uniqueId })
 })
@@ -182,0 +182,0 @@ // @gmod/bbi returns features with {uniqueId, start, end, rest}

src/block-view.ts

@@ -378,3 +378,4 @@ import { Buffer } from 'buffer'
       const res = this.bigBedParser.parse(data.subarray(currOffset))
-      items.push({ ...res, uniqueId: `bb-${offset + currOffset}` })
+      res.uniqueId = `bb-${offset + currOffset}`
+      items.push(res)
       currOffset += res.offset
@@ -381,0 +382,0 @@ }

src/range.ts

@@ -15,4 +15,4 @@ /* eslint prefer-rest-params:0, no-nested-ternary:0 */
         : 0 in arg1
-        ? Object.assign({}, arg1)
-        : [arg1]
+          ? Object.assign({}, arg1)
+          : [arg1]
   }
@@ -19,0 +19,0 @@

src/util.ts

@@ -1,2 +0,1 @@
-/* eslint no-bitwise: ["error", { "allow": ["|"] }] */
 export class AbortError extends Error {
@@ -3,0 +2,0 @@ public code: string

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Found 1 instance in 1 package

Fixed alerts

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Improved metrics

Total package byte prevSize

248029

increased by0.9%

Dev dependency count

17

decreased by-10.53%

Lines of code

4165

increased by0.05%

No dependency changes