@jbrowse/core

jbrowse-core

Core JBrowse libraries used by most JBrowse plugins.

Documentation

See docs

Academic Use

This package was written with funding from the NHGRI as part of the JBrowse project. If you use it in an academic project that you publish, please cite the most recent JBrowse paper, which will be linked from jbrowse.org.

License

Apache-2.0 © Evolutionary Software Foundation

Changelog

1.7.10 (2022-06-13)

<details><summary>Packages in this release</summary> <p>

| Package | Download | | --------------------------------------- | ----------------------------------------------------------------- | | @jbrowse/core | https://www.npmjs.com/package/@jbrowse/core | | @jbrowse/plugin-alignments | https://www.npmjs.com/package/@jbrowse/plugin-alignments | | @jbrowse/plugin-authentication | | | @jbrowse/plugin-breakpoint-split-view | | | @jbrowse/plugin-config | https://www.npmjs.com/package/@jbrowse/plugin-config | | @jbrowse/plugin-data-management | https://www.npmjs.com/package/@jbrowse/plugin-data-management | | @jbrowse/plugin-dotplot-view | | | @jbrowse/plugin-linear-comparative-view | | | @jbrowse/plugin-linear-genome-view | https://www.npmjs.com/package/@jbrowse/plugin-linear-genome-view | | @jbrowse/plugin-spreadsheet-view | | | @jbrowse/plugin-sv-inspector | | | @jbrowse/plugin-variants | https://www.npmjs.com/package/@jbrowse/plugin-variants | | @jbrowse/plugin-wiggle | https://www.npmjs.com/package/@jbrowse/plugin-wiggle | | @jbrowse/cli | https://www.npmjs.com/package/@jbrowse/cli | | @jbrowse/desktop | | | @jbrowse/img | https://www.npmjs.com/package/@jbrowse/img | | jbrowse-predefined-sessions | | | @jbrowse/react-circular-genome-view | https://www.npmjs.com/package/@jbrowse/react-circular-genome-view | | @jbrowse/react-linear-genome-view | https://www.npmjs.com/package/@jbrowse/react-linear-genome-view | | @jbrowse/web | |

</p> </details>

:rocket: Enhancement

• Other
  • #3025 Add dotplot session spec (@cmdcolin)
  • #2975 Add simplified URL format for loading synteny views (@cmdcolin)
  • #3023 Add error handling in case of invalid OAuth2 configuration used. (@andrzejgrzelak)
  • #3020 Allow choosing trackId when using text-index with --file with --fileId (@cmdcolin)
  • #3016 Allow whitespace separated refname,start,end type locstring (@cmdcolin)
  • #3006 Add string array configuration slot UI improvements (@cmdcolin)
  • #2998 Avoid rendering offscreen contents in pileup renderer (@cmdcolin)
  • #3000 Add reference base and correct percentage calculations to tooltip on SNPCoverage display (@cmdcolin)
• core
  • #2981 Add simplified URL format for loading spreadsheet and SV inspector (@cmdcolin)
  • #2990 Use shortened megabases (M) display when zoomed out, and option to hide the "open track selector" button (@carolinebridge-oicr)
  • #3003 Add ability to run field formatters on the feature details panel (@cmdcolin)
  • #3017 Add button to copy track config in About track dialog (@cmdcolin)
  • #2999 Generate clickable links to track data in about track dialog (@cmdcolin)
• __mocks__, core
  • #3005 Use cascading menu helper library for track menu to avoid menu going offscreen (@cmdcolin)

:bug: Bug Fix

• Other
  • #3021 Fix mouseover display of read name to alignments track (@cmdcolin)
  • #3012 Small fix to rankSearchResults logic (@cmdcolin)
  • #3009 Add jsdom to jbrowse-img to fix --noRasterize option (@cmdcolin)
• core
  • #3007 Fix read vs ref dotplot view (@cmdcolin)

Committers: 3

• Caroline Bridge (@carolinebridge-oicr)
• Colin Diesh (@cmdcolin)
• @andrzejgrzelak