auspice - npm Package Versions

version 2.32.1 - 2021/11/11

• Fix URL parsing to allow the string "narratives" to be in a dataset without it being interpreted as a narrative itself. See PR 1428 for more.

version 2.32.0 - 2021/10/20

• Tree info boxes are now improved, and you can shift+click on a branch to see more information about that branch. See PR 1420 for more.
• Filters in footer are now expandable to improve usability and discoverability of the true footer. See PR 1414 for more.
• Fixed a bug with CSV (drag & drop) parsing. See PR 1401 for more.
• Removed unnecessary postinstall step. See PR 1419 for more.
• Improved image sizing in narratives. See PR 1408 for more.
• Improved documentation around how to build auspice documentation!

version 2.31.0 - 2021/09/16

• Improvements to our ability to zoom out in a tree, both by exposing the root branch and via a new icon next to "Zoom to Selected". See PR 1392 for more.

version 2.30.0 - 2021/09/07

• Narratives can now load sidecar files and second trees. This allows allowing frequency panel display, colouring by root-sequence, and tanglegrams. See PR 1305 for more.
• Excel (.xlsx) files can be used as additional metadata for drag-and-drop. See PR 1386 for more.
• Trees are now clipped to improve axes visibility. See PR 1383 for more.
• Improved accession URL creation. See PR 1382 for more.
• minor documentation improvements.

version 2.29.1 - 2021/07/16

• Update TravisCI script to improve how we publish Auspice to npm. See PR 1380 for more.

version 2.29.0 - 2021/07/15

Note: this version may not install from npm. Please use v2.29.1 instead

• Branch labels are no longer displayed if the branch is not in the selected view. See PR 1370 for more.
• Clicking on a tip and then closing the info-box will result in that tip remaining as a inactivated filter. See PR 1372 for more.
• Category filters in the sidebar can now be used to inactivate all active filters in a category, and if all are inactive then this may be used to re-activate them all. See PR 1371 for more.
• On-hover tooltip widths are improved for the tree. See PR 1375 for more.
• [bugfix] Colour scales can now have 37 values. See PR 1355 for more.

Minor updates

• Docs updates
• Updated files fetched by npm run get-data

version 2.28.0 - 2021/07/05

• Remove ability to download metadata TSV from GISAID datasets. Replace with acknowledgments TSV. See PR 1366.
• Cleanup header fields when downloading metadata TSV, including switch to use name (eg pango_lineage) instead of title (eg PANGO lineage). See PR 1367.
• Update styling of footer text. See PR 1364.

version 2.27.0 - 2021/06/05

• Adjust greyscale colour ramp. See PR 1353 for more.
• (Bugfix) Fixed the situation where the regression toggle would not appear for clock layouts. See PR 1352 for more.

version 2.26.0 - 2021/05/25

• Scatterplot improvements:
  • Non-continuous variables can now be used, which allows all colourings (including Genotype, if that's the current colouring) to be scatterplot variables.
  • Jittering is applied when the spacing between axis variables is more than 50 pixels.
  • See PR 1346 for more.
• Normalized frequency values now tend to zero in the absence of data. See PR 1325 for more.
• Colour scale improvements:
  • Continuous colourings can provide a scale, which we interpolate between to get the colour scheme
  • Custom legend data can be provided, including display text and, for continuous variables, bounds to map legend entries to values in the data.
  • Displayed legend entires may be restricted by specifying them in the dataset JSON.
  • See PR 1340 for more.
• Filtering via the sidebar UI now returns options which match each of the space-separated queries, rather than requiring an exact match of the query. See PR 1344 for more.
• Legend text now takes the maximum available space. See PR 1328 for more.

version 2.25.1 - 2021/04/07

• Bugfix for cases where certain interactions with scatterplot variables would cause auspice to crash. See PR 1332 for more.