bel

BEL package

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BEL Python Package

Main documentation is at <http://bel.readthedocs.io/en/latest/>.

Currently handles BEL 2.0.0, but it is easily extensible to new versions of BEL.

Install

pip install bel

Planned features

• [Done] Allow multiple BEL Specification files for different BEL versions (including experimental versions)
• [Done] Provide a standard EBNF file for parser generation for each BEL Specification
• [Done] Identify syntax issues in the statement and provide suggestions on fixing them
• [Done] Identify semantic issues in the statement and provide suggestions on fixing them
• [Done] Identify unknown Namespaces or Namespace values
• [Done] Convert BEL statements into an AST and then back into a BEL Statement
• Provide autocompletion suggestions given a location in the BEL Statement
• Read a Nanopub and validate the full Nanopub, e.g. the BEL statement, Annotations, Citation, etc
• BEL Pipeline - Process new Nanopubs in NanopubStore into Edges and load in EdgeStore
• [Done] Convert BELScript into BEL Nanopubs
• Command line interface (partially done)