Bio2BEL is a project aimed at bringing biological databases and other structured knowledge sources in a wide variety
of schemata into the unified framework of the
Biological Expression Language <https://biological-expression-language.github.io/>_ [1]_.
Two important places to look:
How to make a Bio2BEL Repository <http://bio2bel.readthedocs.io/en/latest/tutorial.html>_How to use the CLI <http://bio2bel.readthedocs.io/en/latest/cli.html>_Download the latest stable code from PyPI <https://pypi.org/project/bio2bel>_ with:
.. code-block:: sh
$ python -m pip install bio2bel
or get the latest from GitHub with:
.. code-block:: sh
$ git clone https://github.com/bio2bel/bio2bel.git $ cd bio2bel $ python -m pip install -e .
or check the installation instructions <http://bio2bel.readthedocs.io/en/latest/#installation>_.
If you find Bio2BEL useful for your work, please consider citing:
.. [1] Hoyt, C. T., et al. (2019). Integration of Structured Biological Data Sources using Biological Expression Language <https://doi.org/10.1101/631812>_. bioRxiv, 631812.
.. |build| image:: https://travis-ci.com/bio2bel/bio2bel.svg?branch=master :target: https://travis-ci.com/bio2bel/bio2bel :alt: Build Status
.. |coverage| image:: https://codecov.io/gh/bio2bel/bio2bel/coverage.svg?branch=master :target: https://codecov.io/gh/bio2bel/bio2bel?branch=master :alt: Coverage Status
.. |docs| image:: http://readthedocs.org/projects/bio2bel/badge/?version=latest :target: http://bio2bel.readthedocs.io/en/latest/?badge=latest :alt: Documentation Status
.. |python_versions| image:: https://img.shields.io/pypi/pyversions/bio2bel.svg :alt: Stable Supported Python Versions
.. |pypi_version| image:: https://img.shields.io/pypi/v/bio2bel.svg :alt: Current version on PyPI
.. |pypi_license| image:: https://img.shields.io/pypi/l/bio2bel.svg :alt: MIT License
.. |zenodo| image:: https://zenodo.org/badge/99800349.svg :target: https://zenodo.org/badge/latestdoi/99800349
FAQs
A framework for converting biological data sources to BEL
We found that bio2bel demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
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