A tiny cython library to calculate the pairwise overlap of all cell masks between two time points. Created for use in https://github.com/Hekstra-Lab/microutil/
pip install fast-overlap
python setup.py build_ext -i
To really remove stuff and build + test:
rm *.so build/ fast_overlap.cpp -rf && python setup.py build_ext -i && python test_speedup.py
You need to compile python extensions with the same compiler used to compile python. So on mac you should use clang. However the apple distributed clang doesn't include openmp so you should either use g++ locally (which seems to work for some reason, but doesn't for built wheels) or use homebrew clang as in the github workflows.
FAQs
Unknown package
We found that fast-overlap demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
Did you know?
Socket for GitHub automatically highlights issues in each pull request and monitors the health of all your open source dependencies. Discover the contents of your packages and block harmful activity before you install or update your dependencies.
Security News
PyPI confirms no security flaws were exploited in the Ultralytics supply chain attack and highlights improvements for safer package publishing.
Security News
Research
The Socket Research Team breaks down a malicious wrapper package that uses obfuscation to harvest credentials and exfiltrate sensitive data.
Research
Security News
Attackers used a malicious npm package typosquatting a popular ESLint plugin to steal sensitive data, execute commands, and exploit developer systems.