A pure Python library for handling FASTQ and FASTA files.
Install fqfa from PyPI using pip:
pip3 install fqfa
To set up the package for development purposes, include the optional dependencies and install pre-commit:
pip3 install fqfa[dev]
pre-commit install
Building the documentation requires the following additional packages:
pip3 install sphinx
pip3 install sphinx-rtd-theme
Online documentation including usage examples is available on Read the Docs.
To report a problem or request a new feature, please use the GitHub issue tracker.
To cite this package please refer to "fqfa: A pure Python package for genomic sequence files".
Contributions via pull request are welcome. Contributed code should have full unit test coverage, NumPy-style docstrings, black formatting, and type hints.
FAQs
A lightweight Python library for handling FASTQ and FASTA files.
We found that fqfa demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 2 open source maintainers collaborating on the project.
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