morphonet

MorphoNet

This is an API is used to interact with MorphoNet with python script. You can find more help and tutorials on the MorphoNet website : http://www.morphonet.org

Help pages : https://morphonet.org/help_api

How to use : https://morphonet.org/helpfiles/API/index.html

Pip Project :https://pypi.org/project/morphonet/

This git contains :

• API(Net+Plot)
• Help API
• Script Build API Package to Pip

Installation

This API work on python 3.7 You can simply install the MorphoNet API using pip install morphonet

Dependencies

The package will automatically install some dependencies :

• numpy
• scikit-image
• scipy
• vtk (to convert the segmentation in meshes)
• requests (to interrogate the morphonet server)
• imageio (for Image Handling)
• nibabel (to load and save in nii format)

Examples

Some examples are here to help you get started in the examples directory. For example, TestConnection.py

Authors

Emmanuel Faure [1,2]

Benjamin Gallean [1,2]

Tao Laurent [2]

with theses affiliations

[1] Centre de Recherche de Biologie cellulaire de Montpellier, CRBM, CNRS, Université de Montpellier, France. [2] Laboratoire d'Informatique, de Robotique et de Microélectronique de Montpellier (LIRMM), LIRMM, Univ Montpellier, CNRS, Montpellier, France.

*Correspondence should be addressed to Emmanuel Faure ([e-mail])

License

This project is licensed under the CeCILL License - see the LICENSE file for details