pyQTL is a python module for analyzing and visualizing quantitative trait loci (QTL) data.
The following functionalities are provided:
qtl.annotation: class for working with gene annotations; includes a GTF parser.qtl.coloc: Python implementation of core functions from the R COLOC package.qtl.io: functions for reading/writing BED and GCT files.qtl.locusplot: functions for generating LocusZoom-style regional association plots.qtl.pileup: functions for visualizing QTL effects in read pileups from, e.g., RNA-seq data.qtl.plot: plotting functions for QTLs.You can install pyQTL using pip:
pip3 install qtl
or directly from this repository:
$ git clone git@github.com:broadinstitute/pyqtl.git
$ cd pyqtl
# set up virtual environment and install
$ virtualenv venv
$ source venv/bin/activate
(venv)$ pip install -e .
FAQs
Utilities for analyzing and visualizing QTL data
We found that qtl demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
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