zymp

Zymp

Zymp is a Python library to design "restriction site arrays", which are compact sequences with many restriction sites.

For instance here is a 159-nucleotide sequence made with Zymp, with 49 enzyme recognition sites (out of 52 provided). That's a frequency of around 3 nucleotides per site:

.. image:: https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/zymp/master/docs/_static/images/example_array.png :width: 800

Infos

PIP installation:

.. code:: bash

pip install zymp

Github Page:

<https://github.com/Edinburgh-Genome-Foundry/zymp>_

License: MIT, Copyright Edinburgh Genome Foundry

More biology software

.. image:: https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/Edinburgh-Genome-Foundry.github.io/master/static/imgs/logos/egf-codon-horizontal.png :target: https://edinburgh-genome-foundry.github.io/

Zymp is part of the EGF Codons <https://edinburgh-genome-foundry.github.io/>_ synthetic biology software suite for DNA design, manufacturing and validation.