bio-band

= bio-band

{}[http://travis-ci.org/#!/arrigonialberto86/bioruby-band]

Data mining and machine learning algorithms for Ruby

== Installation

Install the 'jbundle' gem and 'bundle' for JRuby before trying to install the 'bio-band' gem. Maven is also required for .jars automatic download and installation. On Ubuntu/Debian Maven should already be installed and on OSX system you can get it from Brew

If you want to use 'bio-band' APIs without installing the gem you need to run command 'rake -T' once before requiring the gem in your script (this is necessary for jbundler to download the '.jar' files and subsequently set the Java classpath). Otherwise use:

    gem install bio-band

== Usage

See the Wiki section for in depth information on how to use this gem

== Developers

To use the library

    require 'bio-band'

The API doc is online. For more code examples see also the test files in the source tree.

== Project home page

Information on the source tree, documentation, issues and how to contribute, see

http://github.com/arrigonialberto86/bioruby-band

The BioRuby community is on IRC server: irc.freenode.org, channel: #bioruby.

== Cite

If you use this software, please cite one of

• BioRuby: bioinformatics software for the Ruby programming language
• Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics

== Biogems.info

This Biogem is published at http://biogems.info/index.html#bio-band

== Copyright

Copyright (c) 2013 arrigonialberto86. See LICENSE.txt for further details.