@adntro/raw-dna-dtc-parser - npm Package Compare versions

Comparing version 0.0.11 to 0.0.12

build/src/index.d.ts

 export * from './raw.errors';
 export * from './raw.models';
+export { convertLocalDtcFile } from './raw.converter';
 export { RawFormatNormalizerTransform, EVENTS } from './raw.normalizer';

build/src/index.js

@@ -13,5 +13,7 @@ "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.EVENTS = exports.RawFormatNormalizerTransform = void 0;
+exports.EVENTS = exports.RawFormatNormalizerTransform = exports.convertLocalDtcFile = void 0;
 __exportStar(require("./raw.errors"), exports);
 __exportStar(require("./raw.models"), exports);
+var raw_converter_1 = require("./raw.converter");
+Object.defineProperty(exports, "convertLocalDtcFile", { enumerable: true, get: function () { return raw_converter_1.convertLocalDtcFile; } });
 var raw_normalizer_1 = require("./raw.normalizer");
@@ -18,0 +20,0 @@ Object.defineProperty(exports, "RawFormatNormalizerTransform", { enumerable: true, get: function () { return raw_normalizer_1.RawFormatNormalizerTransform; } });

build/src/raw.normalizer.d.ts

@@ -17,2 +17,5 @@ /// <reference types="node" />
 export declare function guessFormat(header: string): rawFormat;
+export interface RawFormatNormalizerTransformOptions extends TransformOptions {
+    debug: boolean;
+}
 export declare class RawFormatNormalizerTransform extends Transform {
@@ -22,2 +25,3 @@ genotypeStarted: boolean;
     format: rawFormat;
+    debug: boolean;
     warnings: Set<string>;
@@ -27,3 +31,3 @@ lineCount: number;
     chromosomes: Set<chr>;
-    constructor(opts?: TransformOptions);
+    constructor(opts?: RawFormatNormalizerTransformOptions);
     private log;
@@ -30,0 +34,0 @@ private warn;

build/src/raw.normalizer.js

@@ -49,2 +49,3 @@ "use strict";
         this.format = 'other';
+        this.debug = false;
         this.warnings = new Set();
@@ -66,2 +67,4 @@ this.lineCount = 0;
         this.chromosomes = new Set();
+        if ((opts === null || opts === void 0 ? void 0 : opts.debug) === true)
+            this.debug = true;
         this.on(exports.EVENTS.HEADER, header => {
@@ -72,3 +75,4 @@ this.format = guessFormat(header);
     log(...msg) {
-        console.log(...['DEBUG -> ', ...msg]);
+        if (this.debug)
+            console.log(...['DEBUG -> ', ...msg]);
     }
@@ -75,0 +79,0 @@ warn(msg) {

build/src/utils/raw-line-parser.js

@@ -55,8 +55,14 @@ "use strict";
     }
+    if ('' + a1 === '0') {
+        a1 = '-';
+    }
     const nocall = a1 === '-';
-    if (nocall) {
+    if (chr === 'Y' || chr === 'XY' || chr === 'MT') {
+        a2 = undefined;
+    }
+    else if (nocall) {
         a2 = '-';
     }
-    else if (chr === 'Y' || chr === 'XY' || chr === 'MT') {
-        a2 = undefined;
+    else if (a2 && a1 > a2) {
+        [a1, a2] = [a2, a1];
     }
@@ -63,0 +69,0 @@ return {

package.json

 {
   "name": "@adntro/raw-dna-dtc-parser",
-  "version": "0.0.11",
+  "version": "0.0.12",
   "description": "DNA file reader (in DTC formats) and parser",
@@ -34,2 +34,3 @@ "author": "Adntro Genetics SL",
     "@types/node": "^14.11.2",
+    "@types/split2": "^3.2.1",
     "c8": "^7.7.3",
@@ -39,3 +40,6 @@ "gts": "^3.1.0",
     "typescript": "^4.0.3"
+  },
+  "dependencies": {
+    "split2": "^4.0.0"
   }
 }

New alerts

Filesystem access

Supply chain risk

Accesses the file system, and could potentially read sensitive data.

Found 1 instance in 1 package

Improved metrics

Total package byte prevSize

53694

18.92%

Number of package files

30

25%

Lines of code

907

15.25%

Worsened metrics

Dependency count

1

Infinity%

Dev dependency count

7

16.67%

Number of low supply chain risk alerts

1

Infinity%

Dependency changes

• + Added

  split2@^4.0.0

• + Added

  split2@4.2.0
  (transitive)