@alexandrborisovyg/cornerstone-wado-image-loader

cornerstone WADO Image Loader

A cornerstone Image Loader for DICOM P10 instances over HTTP (WADO-URI) or DICOMWeb (WADO-RS). This can be used to integrate cornerstone with WADO-URI servers, DICOMWeb servers or any other HTTP based server that returns DICOM P10 instances (e.g. Orthanc or custom servers)

Key Features

• Implements a cornerstone ImageLoader for DICOM P10 Instances via a HTTP get request.
  • Can be used with a WADO-URI server
  • Can be used with Orthanc's file endpoint
  • Can be used with any server that returns DICOM P10 instances via HTTP GET
• Implements a cornerstone ImageLoader for WADO-RS (DICOMWeb)
• Supports many popular transfer syntaxes and photometric interpretations see full list and codec for more information.
• Framework to execute CPU intensive tasks in web workers
  • Used for image decoding
  • Can be used for your own CPU intensive tasks (e.g. image processing)

Live Examples

Click here for a live example of this library in use!

You can also see it in action with the cornerstoneDemo application.

Install

Get the distributed unminimized file:

• cornerstoneWADOImageLoader.js

or the distributed minimized file:

• cornerstoneWADOImageLoader.bundle.min.js

Usage

The cornerstoneWADOImageLoader depends on the following external libraries which should be loaded before cornerstoneWADOImageLoader.js:

1. dicomParser
2. cornerstone

New in 1.0.0: Specify the cornerstone instance you want to register the loader with.

cornerstoneWADOImageLoader.external.cornerstone = cornerstone;

Have your code configure the web worker framework:

var config = {
  maxWebWorkers: navigator.hardwareConcurrency || 1,
  startWebWorkersOnDemand: true,
};
cornerstoneWADOImageLoader.webWorkerManager.initialize(config);

See the web workers documentation for more details on configuring.

Upgrade to CWIL v4.x

Cornerstone-WADO-Image-Loader (CWIL) v4.0.x has been released, which adds support for using WebAssembly (WASM) builds of each codec. This significantly improves image decoding performance and enables us to load codec at runtime when needed dynamically, which reduces the build time and complexity.

In addition, we have improved the image loading performance in CWIL v4.x. In previous versions of CWIL, image loading includes fetching AND decoding an image before returning a promise completion, preventing more requests from being made until the queue is empty. This limitation has been fixed in CWIL v4, which separates image retrieval and decoding into two steps. Now after an image is retrieved, a new request is sent to the server immediately.

	Improvement
CWIL Bundle Size	30x smaller (3.0 MB vs 87 kb with dynamic import)
JPEG Baseline Codec	4.5x faster (2.87 ms for 512x512 16 bit CT Slice)
JPEG 2000 Codec	1.8x faster (41.02 ms for 512x512 16 bit CT Slice)

Steps to upgrade

Dynamic Import

In v4.x, we have added dynamic importing support for the codecs as needed. To be able to use such feature, instead of

import cornerstoneWADOImageLoader from 'cornerstone-wado-image-loader';

you need to do:

import cornerstoneWADOImageLoader from 'cornerstone-wado-image-loader/dist/dynamic-import/cornerstoneWADOImageLoader.min.js';

This way, codecs are loaded dynamically when needed. You have another option to create an alias in the webpack config file as we do here for OHIF Viewer.

resolve: {
  alias: {
    'cornerstone-wado-image-loader':
      'cornerstone-wado-image-loader/dist/dynamic-import/cornerstoneWADOImageLoader.min.js',
  },
},

In addition WASM builds of the codec files should be made available in the build folder. We use CopyWebpackPlugin to copy the WASM files to the build folder. See here for how we do it in OHIF Viewer.

 plugins: [
  new CopyWebpackPlugin([
    {
      from:
        '../../../node_modules/cornerstone-wado-image-loader/dist/dynamic-import',
      to: DIST_DIR,
    },
  ]),

Note 1: You need to give the correct path in the CopyWebpackPlugin, the above path is relative to the node_modules folder in the OHIF Viewer.

Note 2: For other http servers like IIS, you need to configure it to serve WASM files with the correct MIME type.

Troubleshooting

Having problems viewing your images with cornerstonWADOImageLoader? Check out the troubleshooting guide.

Backlog

• Support for images with pixel padding
• Support for high bit (e.g. mask out burned in overlays)
• Free up DICOM P10 instance after decoding to reduce memory consumption
• Add support for compressed images to WADO-RS loader
• Look at using EMSCRIPTEN based build of IJG for JPEG
• Consolidate all EMSCRIPTEN codecs into one build to cut down on memory use and startup times
• Add support for bulk data items to WADO-RS Loader
• Add events to webWorkerManager so its activity can be monitored
• Add support for issuing progress events from web worker tasks

FAQ

Why is this a separate library from cornerstone?

Mainly to avoid adding a dependency to cornerstone for the DICOM parsing library. While cornerstone is intended to be used to display medical images that are stored in DICOM, cornerstone aims to simplify the use of medical imaging and therefore tries to hide some of the complexity that exists within DICOM. It is also desirable to support display of non DICOM images so a DICOM independent image model makes sense.

How do I build this library myself?

See the documentation here

How do I add my own custom web worker tasks?

See the documentation here

How do I create imageIds that work with this image loader?

See the documentation here

What Transfer Syntaxes are supported?

See transfer syntaxes

Copyright

Copyright 2016 Chris Hafey [e-mail]