@vitessce/constants-internal - npm Package Compare versions

Comparing version 2.0.3 to 3.0.0

dist-tsc/index.js

@@ -1,4 +0,4 @@
-export { ViewType, DataType, FileType, CoordinationType, STATUS, } from './constants';
-export { FILE_TYPE_DATA_TYPE_MAPPING, DATA_TYPE_COORDINATION_VALUE_USAGE } from './constant-relationships';
-export { DEFAULT_COORDINATION_VALUES, AUTO_INDEPENDENT_COORDINATION_TYPES, COMPONENT_COORDINATION_TYPES } from './coordination';
+export { ViewType, DataType, FileType, CoordinationType, STATUS, } from './constants.js';
+export { FILE_TYPE_DATA_TYPE_MAPPING, DATA_TYPE_COORDINATION_VALUE_USAGE } from './constant-relationships.js';
+export { AUTO_INDEPENDENT_COORDINATION_TYPES, COMPONENT_COORDINATION_TYPES } from './coordination.js';
 export { default as META_VERSION } from './version.json';

package.json

 {
   "name": "@vitessce/constants-internal",
-  "version": "2.0.3",
+  "version": "3.0.0",
   "author": "Gehlenborg Lab",
@@ -11,9 +11,11 @@ "homepage": "http://vitessce.io",
   "license": "MIT",
-  "main": "dist/index.mjs",
+  "type": "module",
+  "main": "dist/index.js",
   "files": [
+    "src",
     "dist",
-    "src"
+    "dist-tsc"
   ],
   "devDependencies": {
-    "vite": "^3.0.0",
+    "vite": "^4.3.0",
     "vitest": "^0.23.4"
@@ -24,3 +26,10 @@ },
     "test": "pnpm exec vitest --run -r ../../ --dir ."
+  },
+  "module": "dist/index.js",
+  "exports": {
+    ".": {
+      "types": "./dist-tsc/index.d.ts",
+      "import": "./dist/index.js"
+    }
   }
 }

src/constant-relationships.js

@@ -1,2 +0,2 @@
-import { FileType, DataType, CoordinationType } from './constants';
+import { FileType, DataType, CoordinationType } from './constants.js';
 
@@ -26,2 +26,4 @@ /**
   [FileType.FEATURE_LABELS_ANNDATA_ZARR]: DataType.FEATURE_LABELS,
+  [FileType.IMAGE_OME_TIFF]: DataType.IMAGE,
+  [FileType.OBS_SEGMENTATIONS_OME_TIFF]: DataType.OBS_SEGMENTATIONS,
   [FileType.OBS_FEATURE_MATRIX_MUDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
@@ -28,0 +30,0 @@ [FileType.OBS_SETS_MUDATA_ZARR]: DataType.OBS_SETS,

src/constant-relationships.test.js

@@ -1,5 +0,5 @@
-import { DataType } from './constants';
+import { DataType } from './constants.js';
 import {
   DATA_TYPE_COORDINATION_VALUE_USAGE,
-} from './constant-relationships';
+} from './constant-relationships.js';
 
@@ -6,0 +6,0 @@ describe('src/app/constant-relationships.js', () => {

src/constants.js

@@ -67,2 +67,5 @@ /**
   NEIGHBORHOODS_JSON: 'neighborhoods.json',
+  // OME-TIFF
+  IMAGE_OME_TIFF: 'image.ome-tiff',
+  OBS_SEGMENTATIONS_OME_TIFF: 'obsSegmentations.ome-tiff',
   // New file types to support old file types:
@@ -146,2 +149,3 @@ // - cells.json
   OBS_SET_HIGHLIGHT: 'obsSetHighlight',
+  OBS_SET_EXPANSION: 'obsSetExpansion',
   OBS_SET_COLOR: 'obsSetColor',
@@ -169,2 +173,3 @@ FEATURE_FILTER: 'featureFilter',
   FEATURE_VALUE_TRANSFORM_COEFFICIENT: 'featureValueTransformCoefficient',
+  TOOLTIPS_VISIBLE: 'tooltipsVisible',
 };
@@ -171,0 +176,0 @@

src/coordination.js

@@ -1,67 +0,3 @@
-import { CoordinationType, ViewType } from './constants';
+import { CoordinationType, ViewType } from './constants.js';
 
-/**
- * Coordination types may have default values,
- * which can be defined here, and used by the
- * auto initialization strategy.
- */
-export const DEFAULT_COORDINATION_VALUES = {
-  [CoordinationType.OBS_TYPE]: 'cell',
-  [CoordinationType.FEATURE_TYPE]: 'gene',
-  [CoordinationType.FEATURE_VALUE_TYPE]: 'expression',
-  [CoordinationType.OBS_LABELS_TYPE]: null,
-  [CoordinationType.EMBEDDING_ZOOM]: null,
-  [CoordinationType.EMBEDDING_ROTATION]: 0,
-  [CoordinationType.EMBEDDING_TARGET_X]: null,
-  [CoordinationType.EMBEDDING_TARGET_Y]: null,
-  [CoordinationType.EMBEDDING_TARGET_Z]: 0,
-  [CoordinationType.EMBEDDING_OBS_SET_POLYGONS_VISIBLE]: false,
-  [CoordinationType.EMBEDDING_OBS_SET_LABELS_VISIBLE]: false,
-  [CoordinationType.EMBEDDING_OBS_SET_LABEL_SIZE]: 14,
-  [CoordinationType.EMBEDDING_OBS_RADIUS]: 1,
-  [CoordinationType.EMBEDDING_OBS_RADIUS_MODE]: 'auto',
-  [CoordinationType.EMBEDDING_OBS_OPACITY]: 1,
-  [CoordinationType.EMBEDDING_OBS_OPACITY_MODE]: 'auto',
-  [CoordinationType.SPATIAL_ZOOM]: null,
-  [CoordinationType.SPATIAL_ROTATION]: 0,
-  [CoordinationType.SPATIAL_TARGET_X]: null,
-  [CoordinationType.SPATIAL_TARGET_Y]: null,
-  [CoordinationType.SPATIAL_TARGET_Z]: null,
-  [CoordinationType.SPATIAL_ROTATION_X]: null,
-  [CoordinationType.SPATIAL_ROTATION_Y]: null,
-  [CoordinationType.SPATIAL_ROTATION_Z]: null,
-  [CoordinationType.SPATIAL_AXIS_FIXED]: false,
-  [CoordinationType.SPATIAL_ROTATION_ORBIT]: 0,
-  [CoordinationType.SPATIAL_ORBIT_AXIS]: 'Y',
-  [CoordinationType.SPATIAL_IMAGE_LAYER]: null,
-  [CoordinationType.SPATIAL_SEGMENTATION_LAYER]: null,
-  [CoordinationType.SPATIAL_POINT_LAYER]: null,
-  [CoordinationType.SPATIAL_NEIGHBORHOOD_LAYER]: null,
-  [CoordinationType.HEATMAP_ZOOM_X]: 0,
-  [CoordinationType.HEATMAP_ZOOM_Y]: 0,
-  [CoordinationType.HEATMAP_TARGET_X]: 0,
-  [CoordinationType.HEATMAP_TARGET_Y]: 0,
-  [CoordinationType.FEATURE_VALUE_COLORMAP]: 'plasma',
-  [CoordinationType.FEATURE_VALUE_COLORMAP_RANGE]: [0.0, 1.0],
-  [CoordinationType.FEATURE_VALUE_TRANSFORM]: null,
-  [CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT]: 1,
-  [CoordinationType.FEATURE_FILTER]: null,
-  [CoordinationType.FEATURE_HIGHLIGHT]: null,
-  [CoordinationType.FEATURE_SELECTION]: null,
-  [CoordinationType.OBS_FILTER]: null,
-  [CoordinationType.OBS_HIGHLIGHT]: null,
-  [CoordinationType.OBS_SET_SELECTION]: null,
-  [CoordinationType.OBS_SET_HIGHLIGHT]: null,
-  [CoordinationType.OBS_SET_COLOR]: null,
-  [CoordinationType.OBS_COLOR_ENCODING]: 'cellSetSelection',
-  [CoordinationType.GENOMIC_ZOOM_X]: 0,
-  [CoordinationType.GENOMIC_ZOOM_Y]: 0,
-  [CoordinationType.GENOMIC_TARGET_X]: 1549999999.5,
-  [CoordinationType.GENOMIC_TARGET_Y]: 1549999999.5,
-  [CoordinationType.ADDITIONAL_OBS_SETS]: null,
-  [CoordinationType.MOLECULE_HIGHLIGHT]: null,
-  [CoordinationType.GATING_FEATURE_SELECTION_X]: null,
-  [CoordinationType.GATING_FEATURE_SELECTION_Y]: null,
-};
-
 // The following coordination types should be
@@ -73,2 +9,3 @@ // initialized to independent scopes when
 // like "legacy" Vitessce (pre-coordination model).
+// TODO: delegate to PluginCoordinationType class
 export const AUTO_INDEPENDENT_COORDINATION_TYPES = [
@@ -129,2 +66,3 @@ CoordinationType.HEATMAP_ZOOM_X,
     CoordinationType.ADDITIONAL_OBS_SETS,
+    CoordinationType.TOOLTIPS_VISIBLE,
   ],
@@ -198,2 +136,3 @@ [ViewType.GATING]: [
     CoordinationType.MOLECULE_HIGHLIGHT,
+    CoordinationType.TOOLTIPS_VISIBLE,
   ],
@@ -222,2 +161,3 @@ [ViewType.HEATMAP]: [
     CoordinationType.ADDITIONAL_OBS_SETS,
+    CoordinationType.TOOLTIPS_VISIBLE,
   ],
@@ -228,2 +168,3 @@ [ViewType.OBS_SETS]: [
     CoordinationType.OBS_SET_SELECTION,
+    CoordinationType.OBS_SET_EXPANSION,
     CoordinationType.OBS_SET_HIGHLIGHT,
@@ -239,2 +180,3 @@ CoordinationType.OBS_SET_COLOR,
     CoordinationType.OBS_SET_SELECTION,
+    CoordinationType.OBS_SET_EXPANSION,
     CoordinationType.OBS_SET_HIGHLIGHT,
@@ -281,2 +223,6 @@ CoordinationType.OBS_SET_COLOR,
     CoordinationType.FEATURE_SELECTION,
+    CoordinationType.ADDITIONAL_OBS_SETS,
+    CoordinationType.OBS_SET_COLOR,
+    CoordinationType.OBS_COLOR_ENCODING,
+    CoordinationType.OBS_SET_SELECTION,
   ],
@@ -283,0 +229,0 @@ [ViewType.LAYER_CONTROLLER]: [

src/index.js

 export {
   ViewType, DataType, FileType, CoordinationType, STATUS,
-} from './constants';
-export { FILE_TYPE_DATA_TYPE_MAPPING, DATA_TYPE_COORDINATION_VALUE_USAGE } from './constant-relationships';
-export { DEFAULT_COORDINATION_VALUES, AUTO_INDEPENDENT_COORDINATION_TYPES, COMPONENT_COORDINATION_TYPES } from './coordination';
+} from './constants.js';
+export { FILE_TYPE_DATA_TYPE_MAPPING, DATA_TYPE_COORDINATION_VALUE_USAGE } from './constant-relationships.js';
+export { AUTO_INDEPENDENT_COORDINATION_TYPES, COMPONENT_COORDINATION_TYPES } from './coordination.js';
 export { default as META_VERSION } from './version.json';

src/version.json

 {
   "note": "This file is regenerated by push-demo.sh.",
-  "version": "2.0.3",
-  "branch": "release-v2.0.3",
-  "date": "2023-02-07",
-  "hash": "ca9494c3"
+  "version": "3.0.0",
+  "branch": "release-v3.0.0",
+  "date": "2023-06-05",
+  "hash": "74d01aab"
 }

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Major refactor

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Found 1 instance in 1 package

Fixed alerts

Major refactor

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Package has recently undergone a major refactor. It may be unstable or indicate significant internal changes. Use caution when updating to versions that include significant changes.

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Improved metrics

Total package byte prevSize

73914

increased by56.96%

Number of package files

25

increased by150%

Lines of code

1802

increased by57.52%

Is type module

Yes

No dependency changes