bbop-graph-noctua - npm Package Compare versions

Comparing version 0.0.15 to 0.0.16

lib/edit.js

@@ -405,10 +405,10 @@ /**
 	// Referenced instance ID.
-	prof.id = ind.id();
+	prof['id'] = ind.id();
 
 	// Collect class expressions and annotations.
 	each(ind.types(), function(ce){
-	    prof.class_expressions.push(ce);
+	    prof['class_expressions'].push(ce);
 	});
 	each(ind.annotations(), function(ann){
-	    prof.annotations.push(ann);
+	    prof['annotations'].push(ann);
 	});
@@ -415,0 +415,0 @@

package.json

 {
     "name": "bbop-graph-noctua",
-    "version": "0.0.15",
+    "version": "0.0.16",
     "license": "BSD-3-Clause",
@@ -34,3 +34,3 @@ "description": "A subclass of bbop-graph that layers on a complete annotation and graph editing model for the Noctua set of tools.",
         "bbop-graph": "0.0.13",
-        "class-expression": "0.0.7",
+        "class-expression": "0.0.8",
         "underscore": "1.8.3"
@@ -37,0 +37,0 @@ },

tests/noctua-basic.tests.js

@@ -7,2 +7,5 @@ ////
 ////
+//// The file we're using is a JSONified version of 5525a0fc00000001
+//// (Consistency Paper March dph)
+////
 
@@ -223,3 +226,5 @@ var assert = require('chai').assert;
 	assert.isString(ev['id'], 'got RI id');
-	assert.equal(ev['cls'], 'ECO:0000021', 'got ev class');
+	// From class_expression.to_string()
+	//assert.equal(ev['cls'], 'ECO:0000021', 'got ev class');
+	assert.equal(ev['cls'], 'physical interaction evidence', 'got ev class');
 	assert.equal(ev['source'], 'PMID:12048186', 'got source ref');
@@ -259,2 +264,6 @@ });
 
+	// Example node.
+	var ex_nid =
+	    'gomodel:taxon_559292-5525a0fc0000001-GO-0005515-5525a0fc0000023';
+
 	// Setup.
@@ -265,2 +274,13 @@ var g = new model.graph();
 	g.load_data_basic(raw_resp['data']);
+
+	// Check type label.
+	var ex_n = g.get_node(ex_nid);
+	var ex_types = ex_n.types()
+	assert.equal(ex_types.length, 1, 'has one type');
+	var ex_type = ex_types[0];
+	assert.equal(ex_type.type(), 'class', 'is a class');
+	assert.equal(ex_type.class_id(), 'GO:0005515', 'has good id');
+	assert.equal(ex_type.class_label(), 'protein binding', 'has good label');
+	
+	// Fold and continue.
 	g.fold_go_noctua(rellist);
@@ -291,12 +311,23 @@
 	// Close examination of a single subgraph.
-	var nid = 'gomodel:taxon_559292-5525a0fc0000001-GO-0005515-5525a0fc0000023';
-	var n = g.get_node(nid);
+	var n = g.get_node(ex_nid);
 	assert.equal(n._is_a, 'bbop-graph-noctua.node', 'node is a node');
 	var s = n.subgraph();
-	//console.log(s);
 	assert.equal(s._is_a, 'bbop-graph-noctua.graph', 'graph is a graph');
 	assert.equal(s.all_nodes().length, 2, 'subgraph has two nodes');
 	assert.equal(s.all_edges().length, 1, 'subgraph has one edges');
-	assert.equal(s.all_edges()[0].predicate_id(), 'RO:0002333', 'correct subraph edge');
-	//console.log();
+	assert.equal(s.all_edges()[0].predicate_id(), 'RO:0002333',
+		     'correct subraph edge');
+
+	// Unfold and retest labels.
+	(function(){
+	    g.unfold();
+	    var ex_n = g.get_node(ex_nid);
+	    var ex_types = ex_n.types()
+	    assert.equal(ex_types.length, 1, 'has one type');
+	    var ex_type = ex_types[0];
+	    assert.equal(ex_type.type(), 'class', 'is a class');
+	    assert.equal(ex_type.class_id(), 'GO:0005515', 'has good id');
+	    assert.equal(ex_type.class_label(), 'protein binding',
+			 'has good label');
+	})();
     });
@@ -303,0 +334,0 @@ });

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Improved metrics

Total package byte prevSize

6337600

increased by0.02%

Lines of code

27188

increased by0.1%

Dependency changes

• + Addedclass-expression@0.0.8(transitive)

• - Removedclass-expression@0.0.7(transitive)

• Updatedclass-expression@0.0.8