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cellpop
A React component for visualizing cell populations in two-dimensional array data.
CellPop: Cell Type Composition Explorer
CellPop is an interactive visualization tool for cell type compositions. Easily compare your cell type compositions with different visual encodings, filter and sort on metadata, and export for communication.
Why CellPop?
Cell type populations are commonly shown with stacked bar charts. However, scaling the number of samples and cell types in these visualizations create issues with analyzing these charts. CellPop alleviates this by presenting a flexible heatmap and side views with extending layered bar charts.
Installs
CellPop is available on NPM and PyPI.
npm i cellpop
pip install cellpop
Demo
A demo is available here. How to use the CellPopComponent is shown here.
The main view and interactions:
Set-up
This project uses pnpm.
Install dependencies with:
pnpm install
Run the demo with:
pnpm run dev
Instructions for Python package are it's own contributing guidelines.
Team
- Thomas C. Smits (tsmits@hms.harvard.edu)
- Nikolay Akhmetov (nikolay_akhmetov@hms.harvard.edu)
- Tiffany Liaw (tiffany_liaw@hms.harvard.edu)
- Nils Gehlenborg (nils@hms.harvard.edu)
FAQs
A React component for visualizing cell populations in two-dimensional array data.
The npm package cellpop receives a total of 368 weekly downloads. As such, cellpop popularity was classified as not popular.
We found that cellpop demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 2 open source maintainers collaborating on the project.
Package last updated on 12 Sep 2025
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