Huge News!Announcing our $40M Series B led by Abstract Ventures.Learn More →
cornerstonetools-thresholdbrush
Advanced tools
cornerstonetools-thresholdbrush - npm Package Compare versions
Comparing version 1.0.1 to 1.0.2
| { | ||
| "name": "cornerstonetools-thresholdbrush", | ||
| "version": "1.0.1", | ||
| "version": "1.0.2", | ||
| "description": "A brush tool that allows you to set a low and high threshold range in HU units while drawing segmentations.", | ||
@@ -5,0 +5,0 @@ "main": "index.js", |
| // This tool extends the default brush tool to allow for a threshold value to be set using hounsfield units with a low and high values. The threshold decides if the brush should paint the pixel or not. | ||
| import cornerstoneTools from "cornerstone-tools"; | ||
| import cornerstone from "cornerstone-core"; | ||
| import cornerstoneTools from "cornerstone-tools" | ||
| import cornerstone from "cornerstone-core" | ||
| const { drawBrushPixels, getCircle } = cornerstoneTools.import( | ||
| "util/segmentationUtils" | ||
| ); | ||
| const segmentationModule = cornerstoneTools.getModule("segmentation"); | ||
| const BaseBrushTool = cornerstoneTools.import("base/BaseBrushTool"); | ||
| const { drawBrushPixels, getCircle } = cornerstoneTools.import('util/segmentationUtils'); | ||
| const segmentationModule = cornerstoneTools.getModule("segmentation") | ||
| const BaseBrushTool = cornerstoneTools.import("base/BaseBrushTool") | ||
| /** | ||
@@ -23,60 +22,65 @@ * @public | ||
| export class ThresholdBrushTool extends BaseBrushTool { | ||
| constructor(props = {}) { | ||
| const defaultProps = { | ||
| name: 'ThresholdBrush', | ||
| supportedInteractionTypes: ['Mouse'], | ||
| configuration: { | ||
| thresholdLow: 200, | ||
| thresholdHigh: 1000, | ||
| }, | ||
| mixins: ['renderBrushMixin'], | ||
| }; | ||
| constructor(props = {}) { | ||
| const defaultProps = { | ||
| name: "ThresholdBrush", | ||
| supportedInteractionTypes: ["Mouse"], | ||
| configuration: { | ||
| thresholdLow: 200, | ||
| thresholdHigh: 1000, | ||
| }, | ||
| mixins: ["renderBrushMixin"], | ||
| }; | ||
| super(props, defaultProps); | ||
| super(props, defaultProps); | ||
| } | ||
| } | ||
| /** | ||
| * Paints the data to the labelmap if the mouse is down and the pixel is in the threshold low and high values range. | ||
| * @protected | ||
| * @param {Object} | ||
| * @returns {void} | ||
| */ | ||
| _paint(evt) { | ||
| const { configuration } = segmentationModule; | ||
| const toolConfiguration = this.configuration; | ||
| const eventData = evt.detail; | ||
| const element = eventData.element; | ||
| const { rows, columns } = eventData.image; | ||
| const { x, y } = eventData.currentPoints.image; | ||
| /** | ||
| * Paints the data to the labelmap if the mouse is down and the pixel is in the threshold low and high values range. | ||
| * @protected | ||
| * @param {Object} | ||
| * @returns {void} | ||
| */ | ||
| _paint(evt) { | ||
| const { configuration } = segmentationModule; | ||
| const toolConfiguration = this.configuration; | ||
| const eventData = evt.detail; | ||
| const element = eventData.element; | ||
| const { rows, columns } = eventData.image; | ||
| const { x, y } = eventData.currentPoints.image; | ||
| if (x < 0 || x > columns || y < 0 || y > rows) { | ||
| return; | ||
| } | ||
| // check if the pixel is in the threshold range | ||
| const radius = configuration.radius; | ||
| const pointerArray = getCircle(radius, rows, columns, x, y); | ||
| // loop over the pixels in the circle and eliminate any that are outside the threshold range | ||
| const thresholdedPointerArray = pointerArray.filter((pointer) => { | ||
| const storedPixel = cornerstone.getStoredPixels(element, pointer[0], pointer[1], 1, 1); | ||
| const hounsfieldValue = storedPixel[0] * eventData.image.slope + eventData.image.intercept; | ||
| return hounsfieldValue >= toolConfiguration.thresholdLow && hounsfieldValue <= toolConfiguration.thresholdHigh; | ||
| }); | ||
| const { labelmap2D, labelmap3D, shouldErase } = this.paintEventData; | ||
| // Draw / Erase the active color. | ||
| drawBrushPixels( | ||
| thresholdedPointerArray, | ||
| labelmap2D.pixelData, | ||
| labelmap3D.activeSegmentIndex, | ||
| columns, | ||
| shouldErase | ||
| ); | ||
| cornerstone.updateImage(evt.detail.element); | ||
| } | ||
| if (x < 0 || x > columns || y < 0 || y > rows) { | ||
| return; | ||
| } | ||
| // check if the pixel is in the threshold range | ||
| const radius = configuration.radius; | ||
| const pointerArray = getCircle(radius, rows, columns, x, y); | ||
| // loop over the pixels in the circle and eliminate any that are outside the threshold range | ||
| const thresholdedPointerArray = pointerArray.filter((pointer) => { | ||
| const storedPixel = cornerstone.getStoredPixels( | ||
| element, | ||
| pointer[0], | ||
| pointer[1], | ||
| 1, | ||
| 1 | ||
| ); | ||
| const hounsfieldValue = | ||
| storedPixel[0] * eventData.image.slope + eventData.image.intercept; | ||
| return ( | ||
| hounsfieldValue >= toolConfiguration.thresholdLow && | ||
| hounsfieldValue <= toolConfiguration.thresholdHigh | ||
| ); | ||
| }); | ||
| const { labelmap2D, labelmap3D, shouldErase } = this.paintEventData; | ||
| // Draw / Erase the active color. | ||
| drawBrushPixels( | ||
| thresholdedPointerArray, | ||
| labelmap2D.pixelData, | ||
| labelmap3D.activeSegmentIndex, | ||
| columns, | ||
| shouldErase | ||
| ); | ||
| cornerstone.updateImage(evt.detail.element); | ||
| } | ||
| } |
New alerts
License Policy Violation
LicenseThis package is not allowed per your license policy. Review the package's license to ensure compliance.
Found 1 instance in 1 package
Fixed alerts
License Policy Violation
LicenseThis package is not allowed per your license policy. Review the package's license to ensure compliance.
Found 1 instance in 1 package
Improved metrics
- Lines of code
- increased by18.75%
76
Worsened metrics
- Total package byte prevSize
- decreased by-3.76%
4759
No dependency changes