A library for mapping transcript/protein positions to the genome
Install the g2p_mapper library from npm, then
import { genomeToTranscriptMapping } from 'g2p_mapper'
// pass in your feature, f, which is a "transcript" feature with the following
// data format:
// interface Feat {
// strand: number
// refName: string
// type: string
// phase: number
// ID: string
// score: number
// start: number
// end: number
// subfeatures?: Feat[]
// }
const { g2p, p2g, refName, strand } = genomeToTranscriptMapping(f)
See also https://github.com/cmdcolin/interproscan2genome and https://github.com/cmdcolin/g2p_mapper_cli for usages of this tool
FAQs
Map genome to protein coordinates and back
The npm package g2p_mapper receives a total of 1 weekly downloads. As such, g2p_mapper popularity was classified as not popular.
We found that g2p_mapper demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 0 open source maintainers collaborating on the project.
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