higlass - npm Package Versions

v1.12.0

• Migrate to Vite from webpack
• Migrate to web-test-runner from karma
• Update a bunch of packages (most notably d3 packages which have a slightly different API)
• Fix tests
• Update scss to fix deprecation warnings
• Remove all references to TravisCI.
• Update linting and schema tests to GH Actions.
• Tracks can now implement click(), which allows them to react to click events on the corresponding track
• Tracks can now implement clickDialog, to open modals and display custom data in them (e.g. in response to a click on the track)

v1.11.11

• Bump terser-webpack-plugin version to fix build issue

v1.11.10

• Remove dependency on cwise
• Fix color issue in GeneAnnotation SVG export

v1.11.8

• Remove react-bootstrap from the GenomePositionSearchBox
• Make vertical chromosome labels as well as loading status labels readable in vertical tracks
• Added an option menu item for rectangle domain fill opacity
• Added a parameter in zoomToGene to allow specifying padding around gene
• Add data fetchers to AVAILABLE_FOR_PLUGINS
• Update track list in AVAILABLE_FOR_PLUGINS
• Correctly setup initial scales of vertical tracks when the width of a center track is zero.
• Config-wise, allow axis-specific location locks (e.g., lock the vertical axis in a view to the horizontal axis in another).
• Add reload implementation to HiGlassComponenet API.

Detailed changes since v1.11.5

v1.11.7

• Show visual clue when tileset info is not available ("Tileset info not found. ...").
• Properly initialize the style of 1D brushes (viewport-projection-horizontal and viewport-projection-vertical).

Detailed changes since v1.11.5

v1.11.6

• Allow implementing plugin viewport projection tracks using config.projection.
• Change the default value of zoomLimits to [1, null], which means highest zoom resolution is 1bp.

Detailed changes since v1.11.5

v1.11.5

• Add a zoomToGene API that allows to zoom a HiGlass view to a location near a certain gene.
• Add a suggestGene API that returns a list of genes of top match for a given keyword based on autocompleteServer.
• Add a top-level option, compactLayout, that controls to allow adding vertical gaps between views.

Detailed changes since v1.11.4

v1.11.4

• Fix colorbar error on degenerate colorscale
• Update horizontal heatmap to regular heatmap rendering so that they can use the same options

Detailed changes since v1.11.3

v1.11.3

• Show a more comprehensive list of track types in the track config menu
• Break up HiGlassComponentTests
• Show only integer ticks in HorizontalChromosomeLabels tracks because it is misleading to have decimal values in genomic coordinates.
• Add a reverseOrientation option in HorizontalChromosomeLabels tracks to allow aligning tick labels and lines on the top or left.
• Make overlays SVG exportable
• Fix a bug that led to the app crash when selectRows is set to an empty array []
• Break up and turn off some tests
• Fix gene annotation mouseover

Detailed changes since v1.11.2