sdf-parser - npm Package Compare versions

Comparing version 4.0.1 to 4.0.2

History.md

@@ -0,1 +1,5 @@
+## [4.0.2](https://github.com/cheminfo-js/sdf-parser/compare/v4.0.1...v4.0.2) (2020-06-27)
+
+
+
 ## [4.0.1](https://github.com/cheminfo-js/sdf-parser/compare/v4.0.0...v4.0.1) (2019-06-12)
@@ -2,0 +6,0 @@

package.json

 {
   "name": "sdf-parser",
-  "version": "4.0.1",
+  "version": "4.0.2",
   "description": "SDF parser",
@@ -37,17 +37,19 @@ "main": "./src/index.js",
   "devDependencies": {
-    "babel-eslint": "^10.0.1",
+    "babel-eslint": "^10.1.0",
     "callback-stream": "^1.1.0",
-    "eslint": "^5.16.0",
-    "eslint-config-cheminfo": "^1.20.1",
-    "eslint-plugin-import": "^2.17.3",
-    "eslint-plugin-jest": "^22.6.4",
-    "jest": "^24.8.0",
-    "openchemlib": "^7.1.0"
+    "eslint": "^7.3.1",
+    "eslint-config-cheminfo": "^4.0.0",
+    "eslint-plugin-import": "^2.22.0",
+    "eslint-plugin-jest": "^23.17.1",
+    "eslint-plugin-prettier": "^3.1.4",
+    "jest": "^26.1.0",
+    "openchemlib": "^7.2.3",
+    "prettier": "^2.0.5"
   },
   "dependencies": {
-    "pumpify": "^2.0.0",
+    "pumpify": "^2.0.1",
     "split2": "^3.1.1",
-    "through2": "^3.0.1",
+    "through2": "^3.0.2",
     "through2-filter": "^3.0.0"
   }
 }

src/parse.js

@@ -10,3 +10,3 @@ 'use strict';
     forEach = {},
-    dynamicTyping = true
+    dynamicTyping = true,
   } = options;
@@ -18,3 +18,3 @@
 
-  var eol = '\n';
+  let eol = '\n';
   if (options.mixedEOL) {
@@ -25,3 +25,3 @@ sdf = sdf.replace(/\r\n/g, '\n');
     // we will find the delimiter in order to be much faster and not use regular expression
-    var header = sdf.substr(0, 1000);
+    let header = sdf.substr(0, 1000);
     if (header.indexOf('\r\n') > -1) {
@@ -34,20 +34,20 @@ eol = '\r\n';
 
-  var sdfParts = sdf.split(new RegExp(`${eol}\\$\\$\\$\\$.*${eol}`));
-  var molecules = [];
-  var labels = {};
+  let sdfParts = sdf.split(new RegExp(`${eol}\\$\\$\\$\\$.*${eol}`));
+  let molecules = [];
+  let labels = {};
 
-  var start = Date.now();
+  let start = Date.now();
 
-  for (var i = 0; i < sdfParts.length; i++) {
-    var sdfPart = sdfParts[i];
-    var parts = sdfPart.split(`${eol}>`);
+  for (let i = 0; i < sdfParts.length; i++) {
+    let sdfPart = sdfParts[i];
+    let parts = sdfPart.split(`${eol}>`);
     if (parts.length > 0 && parts[0].length > 5) {
-      var molecule = {};
-      var currentLabels = [];
+      let molecule = {};
+      let currentLabels = [];
       molecule.molfile = parts[0] + eol;
-      for (var j = 1; j < parts.length; j++) {
-        var lines = parts[j].split(eol);
-        var from = lines[0].indexOf('<');
-        var to = lines[0].indexOf('>');
-        var label = lines[0].substring(from + 1, to);
+      for (let j = 1; j < parts.length; j++) {
+        let lines = parts[j].split(eol);
+        let from = lines[0].indexOf('<');
+        let to = lines[0].indexOf('>');
+        let label = lines[0].substring(from + 1, to);
         currentLabels.push(label);
@@ -58,3 +58,3 @@ if (!labels[label]) {
             isNumeric: dynamicTyping,
-            keep: false
+            keep: false,
           };
@@ -71,3 +71,3 @@ if (
         if (labels[label].keep) {
-          for (var k = 1; k < lines.length - 1; k++) {
+          for (let k = 1; k < lines.length - 1; k++) {
             if (molecule[label]) {
@@ -80,3 +80,3 @@ molecule[label] += eol + lines[k];
           if (labels[label].modifier) {
-            var modifiedValue = labels[label].modifier(molecule[label]);
+            let modifiedValue = labels[label].modifier(molecule[label]);
             if (modifiedValue === undefined || modifiedValue === null) {
@@ -101,5 +101,4 @@ delete molecule[label];
         // only now we can increase the counter
-        for (j = 0; j < currentLabels.length; j++) {
-          var currentLabel = currentLabels[j];
-          labels[currentLabel].counter++;
+        for (let j = 0; j < currentLabels.length; j++) {
+          labels[currentLabels[j]].counter++;
         }
@@ -111,10 +110,10 @@ }
   // all numeric fields should be converted to numbers
-  for (label in labels) {
-    currentLabel = labels[label];
+  for (let label in labels) {
+    let currentLabel = labels[label];
     if (currentLabel.isNumeric) {
       currentLabel.minValue = Infinity;
       currentLabel.maxValue = -Infinity;
-      for (j = 0; j < molecules.length; j++) {
+      for (let j = 0; j < molecules.length; j++) {
         if (molecules[j][label]) {
-          var value = parseFloat(molecules[j][label]);
+          let value = parseFloat(molecules[j][label]);
           molecules[j][label] = value;
@@ -129,3 +128,3 @@ if (value > currentLabel.maxValue) currentLabel.maxValue = value;
   // we check that a label is in all the records
-  for (var key in labels) {
+  for (let key in labels) {
     if (labels[key].counter === molecules.length) {
@@ -138,5 +137,5 @@ labels[key].always = true;
 
-  var statistics = [];
-  for (key in labels) {
-    var statistic = labels[key];
+  let statistics = [];
+  for (let key in labels) {
+    let statistic = labels[key];
     statistic.label = key;
@@ -150,3 +149,3 @@ statistics.push(statistic);
     labels: Object.keys(labels),
-    statistics: statistics
+    statistics: statistics,
   };
@@ -153,0 +152,0 @@ }

src/stream.js

@@ -5,4 +5,4 @@ 'use strict';
 const split2 = require('split2');
+const through2 = require('through2');
 const filter = require('through2-filter');
-const through2 = require('through2');
 
@@ -24,3 +24,3 @@ const parse = require('./parse');
       callback();
-    })
+    }),
   );
@@ -46,3 +46,3 @@ }
       }
-    })
+    }),
   );
@@ -53,3 +53,3 @@ }
   entries,
-  molecules
+  molecules,
 };

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Fixed alerts

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Improved metrics

Total package byte prevSize

12650

increased by1.14%

Worsened metrics

Dev dependency count

10

increased by25%

Lines of code

183

decreased by-0.54%

Number of medium supply chain risk alerts

1

increased byInfinity%

Dependency changes

• Updatedpumpify@^2.0.1

• Updatedthrough2@^3.0.2