xy-parser - npm Package Compare versions

Comparing version 5.0.4 to 5.0.5

lib-esm/index.d.ts

@@ -6,3 +6,2 @@ import type { TextData } from 'cheminfo-types';
  * Parse a text-file and convert it to an object {x:[], y:[]}
- *
  * @param text - Csv or tsv strings.
@@ -15,3 +14,2 @@ * @param options - Parsing options
  * Parse a text-file and returns the parsed data and information about the columns
- *
  * @param text - Csv or tsv strings.
@@ -18,0 +16,0 @@ * @param options - Parsing options

lib-esm/index.js

@@ -5,3 +5,2 @@ import { parse } from './parse';
  * Parse a text-file and convert it to an object {x:[], y:[]}
- *
  * @param text - Csv or tsv strings.
@@ -16,3 +15,2 @@ * @param options - Parsing options
  * Parse a text-file and returns the parsed data and information about the columns
- *
  * @param text - Csv or tsv strings.
@@ -19,0 +17,0 @@ * @param options - Parsing options

lib-esm/parse.d.ts

@@ -5,3 +5,2 @@ import { DataXY, TextData } from 'cheminfo-types';
  * General internal parsing function
- *
  * @param text - Csv or tsv strings.
@@ -12,8 +11,8 @@ * @param options - Parsing options
 export declare function parse(text: TextData, options?: ParseXYOptions): {
-    info: {
+    info: Array<{
         position: number;
         value: string;
-    }[];
+    }>;
     data: DataXY;
 };
 //# sourceMappingURL=parse.d.ts.map

lib-esm/parse.js

@@ -5,3 +5,2 @@ import { ensureString } from 'ensure-string';
  * General internal parsing function
- *
  * @param text - Csv or tsv strings.
@@ -12,5 +11,6 @@ * @param options - Parsing options
 export function parse(text, options = {}) {
-    let { rescale = false, uniqueX = false, xColumn = 0, yColumn = 1, bestGuess = false, 
+    const { rescale = false, uniqueX = false, bestGuess = false, 
     //@ts-expect-error old library used this property and we want to throw an error so that people are forced to migrate
-    keepInfo, numberColumns = Number.MAX_SAFE_INTEGER, maxNumberColumns = Number.MAX_SAFE_INTEGER, minNumberColumns = 2, } = options;
+    keepInfo, } = options;
+    let { xColumn = 0, yColumn = 1, numberColumns = Number.MAX_SAFE_INTEGER, maxNumberColumns = Number.MAX_SAFE_INTEGER, minNumberColumns = 2, } = options;
     if (keepInfo !== undefined) {
@@ -22,5 +22,5 @@ throw new Error('keepInfo has been deprecated, pelase use the new method parseXYAndKeepInfo');
     minNumberColumns = Math.max(xColumn + 1, yColumn + 1, minNumberColumns);
-    let lines = text.split(/[\r\n]+/);
+    const lines = text.split(/[\r\n]+/);
     let matrix = [];
-    let info = [];
+    const info = [];
     let position = 0;
@@ -65,3 +65,3 @@ lines.forEach((line) => {
             const xs = [];
-            for (let row of matrix) {
+            for (const row of matrix) {
                 for (let i = xColumn; i < row.length; i += 2) {
@@ -93,3 +93,3 @@ xs.push(row[i]);
     if (rescale) {
-        let maxY = xMaxValue(result.y);
+        const maxY = xMaxValue(result.y);
         for (let i = 0; i < result.y.length; i++) {
@@ -96,0 +96,0 @@ result.y[i] /= maxY;

lib-esm/ParseXYOptions.d.ts

 export interface ParseXYOptions {
     /**
      *  Will set the maximum value to 1.
-     *
      * @default false
@@ -10,3 +9,2 @@ */
      * Make the X values unique (works only with 'xxyy' format). If the X value is repeated the sum of Y is done.
-     *
      * @default false
@@ -17,3 +15,2 @@ */
      * A number that specifies the x column.
-     *
      * @default 0
@@ -24,3 +21,2 @@ */
      * A number that specifies the y column.
-     *
      * @default 1
@@ -31,3 +27,2 @@ */
      *  Will try to guess which columns are the best.
-     *
      * @default false
@@ -38,3 +33,2 @@ */
      * If the file has 10 columns and you specify here 2 it will reflow the file.
-     *
      * @default Number.MAX_SAFE_INTEGER
@@ -45,3 +39,2 @@ */
      * A number that specifies the maximum number of y columns.
-     *
      * @default "Math.max(xColumn, yColumn)+1"
@@ -52,3 +45,2 @@ */
      * A number that specifies the minimum number of y columns.
-     *
      * @default "Math.min(xColumn, yColumn)+1"
@@ -55,0 +47,0 @@ */

lib/index.d.ts

@@ -6,3 +6,2 @@ import type { TextData } from 'cheminfo-types';
  * Parse a text-file and convert it to an object {x:[], y:[]}
- *
  * @param text - Csv or tsv strings.
@@ -15,3 +14,2 @@ * @param options - Parsing options
  * Parse a text-file and returns the parsed data and information about the columns
- *
  * @param text - Csv or tsv strings.
@@ -18,0 +16,0 @@ * @param options - Parsing options

lib/index.js

@@ -22,3 +22,2 @@ "use strict";
  * Parse a text-file and convert it to an object {x:[], y:[]}
- *
  * @param text - Csv or tsv strings.
@@ -34,3 +33,2 @@ * @param options - Parsing options
  * Parse a text-file and returns the parsed data and information about the columns
- *
  * @param text - Csv or tsv strings.
@@ -37,0 +35,0 @@ * @param options - Parsing options

lib/parse.d.ts

@@ -5,3 +5,2 @@ import { DataXY, TextData } from 'cheminfo-types';
  * General internal parsing function
- *
  * @param text - Csv or tsv strings.
@@ -12,8 +11,8 @@ * @param options - Parsing options
 export declare function parse(text: TextData, options?: ParseXYOptions): {
-    info: {
+    info: Array<{
         position: number;
         value: string;
-    }[];
+    }>;
     data: DataXY;
 };
 //# sourceMappingURL=parse.d.ts.map

lib/parse.js

@@ -8,3 +8,2 @@ "use strict";
  * General internal parsing function
- *
  * @param text - Csv or tsv strings.
@@ -15,5 +14,6 @@ * @param options - Parsing options
 function parse(text, options = {}) {
-    let { rescale = false, uniqueX = false, xColumn = 0, yColumn = 1, bestGuess = false, 
+    const { rescale = false, uniqueX = false, bestGuess = false, 
     //@ts-expect-error old library used this property and we want to throw an error so that people are forced to migrate
-    keepInfo, numberColumns = Number.MAX_SAFE_INTEGER, maxNumberColumns = Number.MAX_SAFE_INTEGER, minNumberColumns = 2, } = options;
+    keepInfo, } = options;
+    let { xColumn = 0, yColumn = 1, numberColumns = Number.MAX_SAFE_INTEGER, maxNumberColumns = Number.MAX_SAFE_INTEGER, minNumberColumns = 2, } = options;
     if (keepInfo !== undefined) {
@@ -25,5 +25,5 @@ throw new Error('keepInfo has been deprecated, pelase use the new method parseXYAndKeepInfo');
     minNumberColumns = Math.max(xColumn + 1, yColumn + 1, minNumberColumns);
-    let lines = text.split(/[\r\n]+/);
+    const lines = text.split(/[\r\n]+/);
     let matrix = [];
-    let info = [];
+    const info = [];
     let position = 0;
@@ -68,3 +68,3 @@ lines.forEach((line) => {
             const xs = [];
-            for (let row of matrix) {
+            for (const row of matrix) {
                 for (let i = xColumn; i < row.length; i += 2) {
@@ -96,3 +96,3 @@ xs.push(row[i]);
     if (rescale) {
-        let maxY = (0, ml_spectra_processing_1.xMaxValue)(result.y);
+        const maxY = (0, ml_spectra_processing_1.xMaxValue)(result.y);
         for (let i = 0; i < result.y.length; i++) {
@@ -99,0 +99,0 @@ result.y[i] /= maxY;

lib/ParseXYOptions.d.ts

 export interface ParseXYOptions {
     /**
      *  Will set the maximum value to 1.
-     *
      * @default false
@@ -10,3 +9,2 @@ */
      * Make the X values unique (works only with 'xxyy' format). If the X value is repeated the sum of Y is done.
-     *
      * @default false
@@ -17,3 +15,2 @@ */
      * A number that specifies the x column.
-     *
      * @default 0
@@ -24,3 +21,2 @@ */
      * A number that specifies the y column.
-     *
      * @default 1
@@ -31,3 +27,2 @@ */
      *  Will try to guess which columns are the best.
-     *
      * @default false
@@ -38,3 +33,2 @@ */
      * If the file has 10 columns and you specify here 2 it will reflow the file.
-     *
      * @default Number.MAX_SAFE_INTEGER
@@ -45,3 +39,2 @@ */
      * A number that specifies the maximum number of y columns.
-     *
      * @default "Math.max(xColumn, yColumn)+1"
@@ -52,3 +45,2 @@ */
      * A number that specifies the minimum number of y columns.
-     *
      * @default "Math.min(xColumn, yColumn)+1"
@@ -55,0 +47,0 @@ */

package.json

 {
   "name": "xy-parser",
-  "version": "5.0.4",
+  "version": "5.0.5",
   "description": "Parse a text-file and convert it to an array of XY points",
@@ -14,2 +14,3 @@ "main": "./lib/index.js",
   "scripts": {
+    "build": "npm run tsc-esm && cheminfo-build --entry lib-esm/index.js --root XYParser",
     "build-doc": "cheminfo doc",
@@ -23,5 +24,4 @@ "check-types": "tsc --noEmit",
     "prettier-write": "prettier --write src",
-    "test": "npm run test-only && npm run eslint && npm run check-types",
-    "test-coverage": "jest --coverage",
-    "test-only": "jest",
+    "test": "npm run test-only && npm run eslint && npm run prettier && npm run check-types",
+    "test-only": "jest --coverage",
     "tsc": "npm run clean && npm run tsc-cjs && npm run tsc-esm",
@@ -46,19 +46,20 @@ "tsc-cjs": "tsc --project tsconfig.cjs.json",
   "devDependencies": {
-    "@types/jest": "^29.5.0",
+    "@types/jest": "^29.5.12",
     "babel-plugin-transform-es2015-modules-commonjs": "^6.26.2",
+    "cheminfo-build": "^1.2.0",
     "cheminfo-tools": "^1.23.3",
     "codecov": "^3.8.3",
-    "eslint": "^8.36.0",
-    "eslint-config-cheminfo-typescript": "^11.3.1",
-    "jest": "^29.5.0",
-    "prettier": "^2.8.7",
-    "rimraf": "^4.4.1",
-    "ts-jest": "^29.0.5",
-    "typescript": "^5.0.2"
+    "eslint": "^8.57.0",
+    "eslint-config-cheminfo-typescript": "^12.2.0",
+    "jest": "^29.7.0",
+    "prettier": "^3.2.5",
+    "rimraf": "^5.0.5",
+    "ts-jest": "^29.1.2",
+    "typescript": "^5.4.2"
   },
   "dependencies": {
-    "cheminfo-types": "^1.4.0",
+    "cheminfo-types": "^1.7.2",
     "ensure-string": "^1.2.0",
-    "ml-spectra-processing": "^12.0.0"
+    "ml-spectra-processing": "^14.2.0"
   }
 }

src/__tests__/ir.test.ts

@@ -8,6 +8,6 @@ import { readFileSync } from 'fs';
 test('ir.asc', () => {
-  let filename = 'ir.asc';
-  let data = readFileSync(path + filename).toString();
+  const filename = 'ir.asc';
+  const data = readFileSync(path + filename).toString();
 
-  let result = parseXY(data);
+  const result = parseXY(data);
   expect(result.x).toBeInstanceOf(Array);
@@ -20,9 +20,9 @@ expect(result.y).toBeInstanceOf(Array);
 test('ir2.asc', () => {
-  let filename = 'ir2.asc';
-  let data = readFileSync(path + filename).toString();
+  const filename = 'ir2.asc';
+  const data = readFileSync(path + filename).toString();
 
-  let result = parseXY(data);
+  const result = parseXY(data);
 
-  let min = Math.min(...result.y);
-  let max = Math.max(...result.y);
+  const min = Math.min(...result.y);
+  const max = Math.max(...result.y);
 
@@ -29,0 +29,0 @@ expect(min).toBeCloseTo(5.604768, 3);

src/__tests__/mass.test.ts

@@ -9,6 +9,6 @@ import { readFileSync } from 'fs';
   it('mass1.txt', () => {
-    let filename = 'mass1.txt';
-    let data = readFileSync(path + filename).toString();
+    const filename = 'mass1.txt';
+    const data = readFileSync(path + filename).toString();
 
-    let result = parseXY(data);
+    const result = parseXY(data);
     expect(result.x).toHaveLength(20);
@@ -19,3 +19,3 @@ expect(result.y).toHaveLength(20);
 
-    let result2 = parseXY(data, { bestGuess: true });
+    const result2 = parseXY(data, { bestGuess: true });
     expect(result2.x).toHaveLength(20);
@@ -28,6 +28,6 @@ expect(result2.y).toHaveLength(20);
   it('mass2.csv', () => {
-    let filename = 'mass2.csv';
-    let data = readFileSync(path + filename).toString();
+    const filename = 'mass2.csv';
+    const data = readFileSync(path + filename).toString();
 
-    let result = parseXY(data, { xColumn: 1, yColumn: 2 });
+    const result = parseXY(data, { xColumn: 1, yColumn: 2 });
     expect(result.x).toHaveLength(20);
@@ -38,3 +38,3 @@ expect(result.y).toHaveLength(20);
 
-    let result2 = parseXY(data, { bestGuess: true });
+    const result2 = parseXY(data, { bestGuess: true });
     expect(result2.x).toHaveLength(20);
@@ -47,6 +47,6 @@ expect(result2.y).toHaveLength(20);
   it('mass3.asc', () => {
-    let filename = 'mass3.asc';
-    let data = readFileSync(path + filename).toString();
+    const filename = 'mass3.asc';
+    const data = readFileSync(path + filename).toString();
 
-    let result = parseXY(data);
+    const result = parseXY(data);
     expect(result.x).toHaveLength(20);
@@ -57,3 +57,3 @@ expect(result.y).toHaveLength(20);
 
-    let result2 = parseXY(data, { bestGuess: true });
+    const result2 = parseXY(data, { bestGuess: true });
     expect(result2.x).toHaveLength(20);
@@ -66,5 +66,5 @@ expect(result2.y).toHaveLength(20);
   it('mass4.spectrum', () => {
-    let filename = 'mass4.spectrum';
-    let data = readFileSync(path + filename).toString();
-    let result = parseXY(data, { numberColumns: 2 });
+    const filename = 'mass4.spectrum';
+    const data = readFileSync(path + filename).toString();
+    const result = parseXY(data, { numberColumns: 2 });
     expect(result.x).toHaveLength(34);
@@ -75,3 +75,3 @@ expect(result.y).toHaveLength(34);
 
-    let result2 = parseXY(data, { bestGuess: true });
+    const result2 = parseXY(data, { bestGuess: true });
     expect(result2.x).toHaveLength(34);
@@ -78,0 +78,0 @@ expect(result2.y).toHaveLength(34);

src/__tests__/simple.test.ts

@@ -7,7 +7,7 @@ import { readFileSync } from 'fs';
 const filename = 'simple.txt';
-let data = readFileSync(path + filename).toString();
+const data = readFileSync(path + filename).toString();
 
 describe('simple test', () => {
   it('Check array and length without options', () => {
-    let result1 = parseXY(data);
+    const result1 = parseXY(data);
     expect(result1).toStrictEqual({ x: [1, 3, 5, 7], y: [2, 4, 6, 8] });
@@ -17,5 +17,5 @@ });
   it('Check array and length with options normalize:true', () => {
-    let result2 = parseXY(data, { rescale: true });
+    const result2 = parseXY(data, { rescale: true });
     expect(result2).toStrictEqual({ x: [1, 3, 5, 7], y: [0.25, 0.5, 0.75, 1] });
   });
 });

src/__tests__/uv.test.ts

@@ -8,6 +8,6 @@ import { readFileSync } from 'fs';
 test('uv.csv', () => {
-  let filename = 'uv.csv';
-  let data = readFileSync(path + filename).toString();
+  const filename = 'uv.csv';
+  const data = readFileSync(path + filename).toString();
 
-  let result = parseXY(data);
+  const result = parseXY(data);
 
@@ -14,0 +14,0 @@ expect(result.x).toBeInstanceOf(Array);

src/__tests__/various.test.ts

@@ -8,5 +8,5 @@ import { readFileSync } from 'fs';
 test('binary', () => {
-  let filename = 'text1.txt';
-  let data = readFileSync(path + filename);
-  let result = parseXY(data);
+  const filename = 'text1.txt';
+  const data = readFileSync(path + filename);
+  const result = parseXY(data);
 
@@ -20,5 +20,5 @@ expect(result.x).toBeInstanceOf(Array);
 test('text1', () => {
-  let filename = 'text1.txt';
-  let data = readFileSync(path + filename).toString();
-  let result = parseXY(data);
+  const filename = 'text1.txt';
+  const data = readFileSync(path + filename).toString();
+  const result = parseXY(data);
 
@@ -32,5 +32,5 @@ expect(result.x).toBeInstanceOf(Array);
 test('text2', () => {
-  let filename = 'text2.txt';
-  let data = readFileSync(path + filename).toString();
-  let result = parseXY(data);
+  const filename = 'text2.txt';
+  const data = readFileSync(path + filename).toString();
+  const result = parseXY(data);
 
@@ -44,5 +44,5 @@ expect(result.x).toBeInstanceOf(Array);
 test('text3', () => {
-  let filename = 'text3.txt';
-  let data = readFileSync(path + filename).toString();
-  let result = parseXY(data, {
+  const filename = 'text3.txt';
+  const data = readFileSync(path + filename).toString();
+  const result = parseXY(data, {
     uniqueX: true,
@@ -56,5 +56,5 @@ });
 test('with some spaces', () => {
-  let filename = 'text4.txt';
-  let data = readFileSync(path + filename).toString();
-  let result = parseXY(data, {
+  const filename = 'text4.txt';
+  const data = readFileSync(path + filename).toString();
+  const result = parseXY(data, {
     uniqueX: true,
@@ -68,5 +68,5 @@ });
 test('with some spaces and taking second and third column', () => {
-  let filename = 'text5.txt';
-  let data = readFileSync(path + filename).toString();
-  let result = parseXY(data, {
+  const filename = 'text5.txt';
+  const data = readFileSync(path + filename).toString();
+  const result = parseXY(data, {
     xColumn: 1,
@@ -79,5 +79,5 @@ yColumn: 2,
 test('with some non numeric lines', () => {
-  let filename = 'text6.txt';
-  let data = readFileSync(path + filename).toString();
-  let result = parseXY(data, {});
+  const filename = 'text6.txt';
+  const data = readFileSync(path + filename).toString();
+  const result = parseXY(data, {});
   expect(result).toStrictEqual({ x: [1, 3, 5], y: [4, 6, 8] });
@@ -87,5 +87,5 @@ });
 test('with some non numeric lines and keeping info', () => {
-  let filename = 'text6.txt';
-  let data = readFileSync(path + filename).toString();
-  let result = parseXYAndKeepInfo(data);
+  const filename = 'text6.txt';
+  const data = readFileSync(path + filename).toString();
+  const result = parseXYAndKeepInfo(data);
   expect(result).toStrictEqual({
@@ -102,5 +102,5 @@ data: { x: [1, 3, 5], y: [4, 6, 8] },
 test('with comma as decimal delimiter', () => {
-  let filename = 'text7.txt';
-  let data = readFileSync(path + filename).toString();
-  let result = parseXY(data, {});
+  const filename = 'text7.txt';
+  const data = readFileSync(path + filename).toString();
+  const result = parseXY(data, {});
   expect(result).toStrictEqual({ x: [1.1, 2.2, 3.3], y: [1, 2, 3] });
@@ -119,5 +119,5 @@ });
 test('with scientific notation', () => {
-  let filename = 'text8.txt';
-  let data = readFileSync(path + filename).toString();
-  let result = parseXYAndKeepInfo(data);
+  const filename = 'text8.txt';
+  const data = readFileSync(path + filename).toString();
+  const result = parseXYAndKeepInfo(data);
   expect(result).toStrictEqual({
@@ -130,7 +130,7 @@ data: { x: [0.11, -11, 0.11], y: [0.22, -22, 0.22] },
 test('large IV scientific notation file', () => {
-  let filename = 'text9.txt';
-  let data = readFileSync(path + filename).toString();
-  let result = parseXY(data, {});
+  const filename = 'text9.txt';
+  const data = readFileSync(path + filename).toString();
+  const result = parseXY(data, {});
   expect(result.x).toHaveLength(6472);
   expect(result.y).toHaveLength(6472);
 });

src/index.ts

@@ -10,3 +10,2 @@ import type { TextData } from 'cheminfo-types';
  * Parse a text-file and convert it to an object {x:[], y:[]}
- *
  * @param text - Csv or tsv strings.
@@ -22,3 +21,2 @@ * @param options - Parsing options
  * Parse a text-file and returns the parsed data and information about the columns
- *
  * @param text - Csv or tsv strings.
@@ -25,0 +23,0 @@ * @param options - Parsing options

src/parse.ts

@@ -9,3 +9,2 @@ import { DataXY, TextData } from 'cheminfo-types';
  * General internal parsing function
- *
  * @param text - Csv or tsv strings.
@@ -19,13 +18,15 @@ * @param options - Parsing options
 ): {
-  info: { position: number; value: string }[];
+  info: Array<{ position: number; value: string }>;
   data: DataXY;
 } {
-  let {
+  const {
     rescale = false,
     uniqueX = false,
-    xColumn = 0,
-    yColumn = 1,
     bestGuess = false,
     //@ts-expect-error old library used this property and we want to throw an error so that people are forced to migrate
     keepInfo,
+  } = options;
+  let {
+    xColumn = 0,
+    yColumn = 1,
     numberColumns = Number.MAX_SAFE_INTEGER,
@@ -47,6 +48,6 @@ maxNumberColumns = Number.MAX_SAFE_INTEGER,
 
-  let lines = text.split(/[\r\n]+/);
+  const lines = text.split(/[\r\n]+/);
 
   let matrix: number[][] = [];
-  let info: { position: number; value: string }[] = [];
+  const info: Array<{ position: number; value: string }> = [];
   let position = 0;
@@ -95,3 +96,3 @@ lines.forEach((line) => {
       const xs: number[] = [];
-      for (let row of matrix) {
+      for (const row of matrix) {
         for (let i = xColumn; i < row.length; i += 2) {
@@ -126,3 +127,3 @@ xs.push(row[i]);
   if (rescale) {
-    let maxY = xMaxValue(result.y);
+    const maxY = xMaxValue(result.y);
     for (let i = 0; i < result.y.length; i++) {
@@ -129,0 +130,0 @@ result.y[i] /= maxY;

src/ParseXYOptions.ts

 export interface ParseXYOptions {
   /**
    *  Will set the maximum value to 1.
-   *
    * @default false
@@ -10,3 +9,2 @@ */
    * Make the X values unique (works only with 'xxyy' format). If the X value is repeated the sum of Y is done.
-   *
    * @default false
@@ -17,3 +15,2 @@ */
    * A number that specifies the x column.
-   *
    * @default 0
@@ -24,3 +21,2 @@ */
    * A number that specifies the y column.
-   *
    * @default 1
@@ -31,3 +27,2 @@ */
    *  Will try to guess which columns are the best.
-   *
    * @default false
@@ -38,3 +33,2 @@ */
    * If the file has 10 columns and you specify here 2 it will reflow the file.
-   *
    * @default Number.MAX_SAFE_INTEGER
@@ -45,3 +39,2 @@ */
    * A number that specifies the maximum number of y columns.
-   *
    * @default "Math.max(xColumn, yColumn)+1"
@@ -52,3 +45,2 @@ */
    * A number that specifies the minimum number of y columns.
-   *
    * @default "Math.min(xColumn, yColumn)+1"
@@ -55,0 +47,0 @@ */

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Found 1 instance in 1 package

Improved metrics

Total package byte prevSize

44330

increased by1.41%

Worsened metrics

Dev dependency count

12

increased by9.09%

Lines of code

829

decreased by-4.05%

Dependency changes

• + Addedml-spectra-processing@14.9.1(transitive)

• + Addedml-xsadd@3.0.1(transitive)

• - Removedml-spectra-processing@12.11.0(transitive)

• - Removedml-xsadd@2.0.0(transitive)

• Updatedcheminfo-types@^1.7.2

• Updatedml-spectra-processing@^14.2.0