aimsim-core
Advanced tools
@@ -1,4 +0,4 @@ | ||
| Metadata-Version: 2.1 | ||
| Metadata-Version: 2.4 | ||
| Name: aimsim_core | ||
| Version: 2.2.2 | ||
| Version: 2.2.3 | ||
| Summary: Core AIMSim molecular featurization and comparison utilities. | ||
@@ -21,2 +21,12 @@ Home-page: https://github.com/VlachosGroup/AIMSim | ||
| Requires-Dist: multiprocess>=0.70 | ||
| Dynamic: author | ||
| Dynamic: classifier | ||
| Dynamic: description | ||
| Dynamic: description-content-type | ||
| Dynamic: home-page | ||
| Dynamic: license | ||
| Dynamic: license-file | ||
| Dynamic: requires-dist | ||
| Dynamic: requires-python | ||
| Dynamic: summary | ||
@@ -23,0 +33,0 @@ <h1 align="center">AIMSim README</h1> |
@@ -627,3 +627,3 @@ """Abstraction of a data set comprising multiple Molecule objects.""" | ||
| "learning_rate": kwargs.get("learning_rate", 200), | ||
| "n_iter": kwargs.get("n_iter", 1000), | ||
| "max_iter": kwargs.get("max_iter", 1000), | ||
| "n_iter_without_progress": kwargs.get("n_iter_without_progress", 300), | ||
@@ -637,3 +637,8 @@ "min_grad_norm": kwargs.get("min_grad_norm", 1e-7), | ||
| } | ||
| embedding = TSNE(metric="precomputed", **params) | ||
| try: | ||
| embedding = TSNE(metric="precomputed", **params) | ||
| except TypeError: | ||
| params.pop("max_iter") | ||
| params["n_iter"] = kwargs.get("n_iter", 1000) | ||
| embedding = TSNE(metric="precomputed", **params) | ||
| dissimilarity_matrix = self.get_distance_matrix() | ||
@@ -640,0 +645,0 @@ X = embedding.fit_transform(dissimilarity_matrix) |
+12
-2
@@ -1,4 +0,4 @@ | ||
| Metadata-Version: 2.1 | ||
| Metadata-Version: 2.4 | ||
| Name: aimsim_core | ||
| Version: 2.2.2 | ||
| Version: 2.2.3 | ||
| Summary: Core AIMSim molecular featurization and comparison utilities. | ||
@@ -21,2 +21,12 @@ Home-page: https://github.com/VlachosGroup/AIMSim | ||
| Requires-Dist: multiprocess>=0.70 | ||
| Dynamic: author | ||
| Dynamic: classifier | ||
| Dynamic: description | ||
| Dynamic: description-content-type | ||
| Dynamic: home-page | ||
| Dynamic: license | ||
| Dynamic: license-file | ||
| Dynamic: requires-dist | ||
| Dynamic: requires-python | ||
| Dynamic: summary | ||
@@ -23,0 +33,0 @@ <h1 align="center">AIMSim README</h1> |
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