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asimov - pypi Package Compare versions

Comparing version
0.5.6
 to
0.5.7
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conda/environment.txt
# This file may be used to create an environment using:
# $ conda create --name <env> --file <this file>
# platform: linux-64
@EXPLICIT
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+2
-1
asimov.egg-info/PKG-INFO
Metadata-Version: 2.1
Name: asimov
Version: 0.5.6
Version: 0.5.7
Summary: A Python package for managing and interacting with data analysis jobs.

@@ -41,2 +41,3 @@ Home-page: https://git.ligo.org/asimov/asimov

Requires-Dist: tinydb
Requires-Dist: pillow>=10.2.0

@@ -43,0 +44,0 @@ # Asimov

+1
-0
asimov.egg-info/requires.txt

@@ -18,1 +18,2 @@ click

tinydb
pillow>=10.2.0
+1
-1
asimov.egg-info/SOURCES.txt

@@ -76,3 +76,3 @@ .gitlab-ci.yml

asimov/report-theme/header.html
containers/olivaw/Dockerfile
conda/environment.txt
docs/Makefile

@@ -79,0 +79,0 @@ docs/make.bat

+9
-7
asimov/analysis.py

@@ -136,9 +136,11 @@ """

pipeline = known_pipelines[self.pipeline]
if hasattr(pipeline, "config_template"):
template_file = pipeline.config_template
else:
try:
template_directory = config.get("templating", "directory")
template_file = os.path.join(f"{template_directory}", template)
except configparser.NoOptionError:
try:
template_directory = config.get("templating", "directory")
template_file = os.path.join(f"{template_directory}", template)
except (configparser.NoOptionError, configparser.NoSectionError):
if hasattr(pipeline, "config_template"):
template_file = pipeline.config_template
else:
from pkg_resources import resource_filename

@@ -145,0 +147,0 @@ 

+1
-1
asimov/configs/bayeswave.ini

@@ -25,3 +25,3 @@ ;

PSDlength={{ likelihood['psd length'] }}
padding=0.0
rolloff={{ likelihood['roll off time'] | default: 0.4 }}
ifo-list={{ ifos }}

@@ -28,0 +28,0 @@ segment-start={{ likelihood['segment start'] }}

+1
-1
asimov/configs/bilby.ini

@@ -78,3 +78,3 @@ {%- if production.event.repository -%}

zero-noise=False
tukey-roll-off=0.4
tukey-roll-off={{ likelihood['roll off time'] | default: 0.4 }}
resampling-method=lal

@@ -81,0 +81,0 @@ 

+10
-1
asimov/event.py

@@ -665,7 +665,16 @@ """

for ifo in self.meta["interferometers"]:
psd_rolloff = self.meta.get("likelihood", {}).get(
"roll off factor", 0.875
)
if ifo not in self.meta["quality"]["maximum frequency"]:
self.meta["quality"]["maximum frequency"][ifo] = int(
0.875 * self.meta["likelihood"]["sample rate"] / 2
psd_rolloff * self.meta["likelihood"]["sample rate"] / 2
)
# Add a warning about roll-offs
if not ("roll off time" in self.meta["likelihood"]):
self.logger.warning(
"Using the default roll off settings (0.4-seconds); note that these may result in spectral leakage."
)
# Get the data quality recommendations

@@ -672,0 +681,0 @@ if "quality" in self.event.meta:

+17
-0
CHANGELOG.rst

@@ -0,1 +1,18 @@

0.5.7
=====
This is a bug-fix release, and doesn't introduce any new features.
Breaking changes
----------------
This release is not believed to introduce any backwards-incompatible changes.
Merges
------
+ `ligo!133 <https://git.ligo.org/asimov/asimov/-/merge_requests/133>`_: Fix a bug with template discovery for pipeline plugins.
+ `ligo!144 <https://git.ligo.org/asimov/asimov/-/merge_requests/144>`_: Allow the PSD roll-off factor to be specified rather than hardcoded.
0.5.6

@@ -2,0 +19,0 @@ =====

+0
-8
docs/source/api/asimov.rst

@@ -14,10 +14,2 @@ Modules

asimov.gitlab module
--------------------
.. automodule:: asimov.gitlab
:members:
:undoc-members:
:show-inheritance:
asimov.ini module

@@ -24,0 +16,0 @@ -----------------

+4
-4
docs/source/conf.py

@@ -21,3 +21,3 @@ # Configuration file for the Sphinx documentation builder.

project = 'Asimov'
copyright = '2020-2023, Daniel Williams'
copyright = '2020-2024, Daniel Williams'
author = 'Daniel Williams'

@@ -30,3 +30,2 @@

# -- General configuration ---------------------------------------------------

@@ -38,2 +37,3 @@

extensions = [
"sphinxcontrib.jquery",
'sphinx.ext.autodoc',

@@ -48,3 +48,3 @@ 'sphinx.ext.doctest',

'sphinxcontrib.autohttp.flask',
"sphinx_multiversion",
]

@@ -70,3 +70,3 @@

smv_released_pattern = r'^refs/tags/v\d+\.\d+\.?\d*$'
smv_latest_version = r'master'
smv_latest_version = r'(master|'+asimov.__version__
smv_outputdir_format = '{ref.name}'
+23
-10
docs/source/installation.rst

@@ -9,2 +9,24 @@ .. _installation-guide:

.. note::
We generally recommend installing ``asimov`` using ``conda``, as this will give you access to all of the other packages it works with most easily.
Installation using ``conda``
----------------------------
``asimov`` is packaged and available for use in conda environments via conda-forge.
Because ``asimov`` is designed to work with many other packages it is normally easiest to create a new conda environment using our environment specification file:
.. code-block:: console
$ conda create --name asimov --file https://git.ligo.org/asimov/asimov/-/raw/master/conda/environment.txt
where you can choose whatever name you wish to replace ``asimov`` in the ``--name`` option.
Alternatively you can install into an existing conda environment from conda forge.
You can do this by ensuring that your conda environment is activated, and then running
.. code-block:: console
$ conda install -c conda-forge asimov
Installation using ``pip``

@@ -38,12 +60,3 @@ --------------------------

Installation using ``conda``
----------------------------
It is also possible to install asimov in a conda environment from conda forge.
You can do this by ensuring that your conda environment is activated, and then running
.. code-block:: console
$ conda install -c conda-forge ligo-asimov
Installation from source

@@ -50,0 +63,0 @@ ------------------------

+1
-1
docs/source/ligo-cookbook/bayeswave.rst

@@ -54,3 +54,3 @@ Bayeswave Analyses

.. clode-block:: yaml
.. code-block:: yaml

@@ -57,0 +57,0 @@ needs:

+2
-1
PKG-INFO
Metadata-Version: 2.1
Name: asimov
Version: 0.5.6
Version: 0.5.7
Summary: A Python package for managing and interacting with data analysis jobs.

@@ -41,2 +41,3 @@ Home-page: https://git.ligo.org/asimov/asimov

Requires-Dist: tinydb
Requires-Dist: pillow>=10.2.0

@@ -43,0 +44,0 @@ # Asimov

+1
-0
requirements.txt

@@ -18,1 +18,2 @@ click

tinydb
pillow>=10.2.0
-13
containers/olivaw/Dockerfile
# This file defines the docker image for running olivaw.
FROM python:3.7
#WORKDIR /usr/src/app
COPY requirements.txt ./
RUN pip install --no-cache-dir -r requirements.txt
RUN pip install git+https://git.ligo.org/daniel-williams/supervisor.git
CMD [ "olivaw" ]
CODEOWNERS

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