BamSnap: a lightweight command-based visualization tool for sequencing reads in BAM files
For more details, see BamSnap Documentation.
pip install bamsnap
git clone https://github.com/parklab/bamsnap
cd bamsnap
python setup.py install
$ bamsnap -bam test.bam -pos 1:7364529 -out test.png
For more details, see BamSnap Documentation.
$ docker pull danielmsk/bamsnap
$ docker run --rm -it -v /local_directory_path:/directory_path_in_image danielmsk/bamsnap bamsnap \
-bam /directory_path_in_image/test.bam \
-pos 1:7364529 \
-out /directory_path_in_image/test.png
FAQs
A converter from .bam to .png for specific genomic region.
We found that bamsnap demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
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