Library for working with biological sequence data as numpy arrays. 

SANDWORM_MODE: Shai-Hulud-Style npm Worm Hijacks CI Workflows and Poisons AI Toolchains

bionumpy

Library for working with biological sequence data as numpy arrays.

knutdrand

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		import bionumpy as bnp

		def test_fna(data_path):
		r = bnp.open(data_path / 'small.fna').read()
		assert len(r) == 3

		Metadata-Version: 2.1
		Name: bionumpy
		Version: 1.0.11
		Version: 1.0.12
		Summary: Library for working with biological sequence data as numpy arrays.
		@@ -5,0 +5,0 @@ Home-page: https://github.com/bionumpy/bionumpy

		@@ -218,2 +218,3 @@ HISTORY.rst
		tests/io_tests/sub_delimiters.py
		tests/io_tests/test_file_extensions.py
		tests/io_tests/test_sam.py
		@@ -220,0 +221,0 @@ tests/io_tests/test_sub_delimiters.py

		@@ -5,3 +5,3 @@ """Top-level package for bionumpy."""
		__email__ = "knutdrand@gmail.com"
		__version__ = '1.0.11'
		__version__ = '1.0.12'

		@@ -8,0 +8,0 @@ import npstructures as nps

		@@ -35,2 +35,4 @@ from pathlib import PurePath
		".fa": MultiLineFastaBuffer,
		".fna": MultiLineFastaBuffer,
		".faa": MultiLineFastaBuffer,
		".fastq": FastQBuffer,
		@@ -78,5 +80,6 @@ ".fq": FastQBuffer,
		else:
		all_buffer_types = {buffer.__name__ for buffer in buffer_types.values()}
		raise RuntimeError(f"File format {suffix} does not have a default buffer type. "
		f"Specify buffer_type argument using get_bufferclass_for_datatype function or"
		f"use one of {str(list(buffer_types.keys()))[1:-1]}")
		f"Specify buffer_type argument using "
		f"one of {str(['bnp.'+b for b in all_buffer_types])} or change to a valid extension: {str(list(buffer_types.keys()))}")

		@@ -83,0 +86,0 @@

bionumpy - npm Package Compare versions

Improved metrics

		@@ -49,3 +49,3 @@ #!/usr/bin/env python
		url='https://github.com/bionumpy/bionumpy',
		version='1.0.11',
		version='1.0.12',
		zip_safe=False,
		@@ -52,0 +52,0 @@ extras_require={'full': ['isal']}