biosimulations-bigg

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BioSimulations-BiGG

BioSimulations-BiGG provides a command-line application for publishing the BiGG model repository <http://bigg.ucsd.edu/>__ of flux balance models to the BioSimulations <https://biosimulations.org>__ repository for simulation projects.

This command-line program is run weekly by the GitHub action in this repository.

Installation

Requirements

-  Python >= 3.7
-  pip

Install latest revision from GitHub

::

pip install git+https://github.com/biosimulations/biosimulations-bigg.git#biosimulations-bigg

API documentation

API documentation is available here <https://docs.biosimulations.org/repositories/bigg>__.

License

This package is released under the MIT license <LICENSE>. BiGG is licensed under the BiGG License <http://bigg.ucsd.edu/license>.

Development team

This package was developed by the Karr Lab <https://www.karrlab.org>__ at the Icahn School of Medicine at Mount Sinai in New York and the Center for Reproducible Biomedical Modeling <http://reproduciblebiomodels.org>. BiGG was developed by the Systems Biology Research Group <https://systemsbiology.ucsd.edu/> at the University of California, San Diego with assistance from the contributors listed here <CONTRIBUTORS.md>__.

Contributing to BioSimulations-BiGG

We enthusiastically welcome contributions to BioSimulations-BiGG! Please see the guide to contributing <CONTRIBUTING.md>__ and the developer's code of conduct <CODE_OF_CONDUCT.md>__.

Acknowledgements

This work was supported by National Institutes of Health award P41EB023912.

Questions and comments

Please contact the BioSimulations Team <mailto:[e-mail]>__ with any questions or comments about this package. Please contact the BiGG Team <https://github.com/SBRG/bigg_models/issues>__ with any questions or comments about BiGG.

.. |Continuous integration| image:: https://github.com/biosimulations/biosimulations-bigg/actions/workflows/ci.yml/badge.svg :target: https://github.com/biosimulations/biosimulations-bigg/actions/workflows/ci.yml .. |Test coverage| image:: https://codecov.io/gh/biosimulations/biosimulations-bigg/branch/dev/graph/badge.svg :target: https://codecov.io/gh/biosimulations/biosimulations-bigg .. |All Contributors| image:: https://img.shields.io/github/all-contributors/biosimulations/biosimulations-bigg/HEAD :target: #contributors-