cellbrowser - npm Package Compare versions

Comparing version 1.2.12 to 1.2.13

PKG-INFO

 Metadata-Version: 2.2
 Name: cellbrowser
-Version: 1.2.12
+Version: 1.2.13
 Summary: UCSC Cellbrowser, an interactive browser for single cell data. Includes converters and basic pipelines for text files, Seurat, Scanpy and Cellranger.
@@ -5,0 +5,0 @@ Home-page: https://github.com/maximilianh/cellBrowser

src/cbPyLib/cellbrowser.egg-info/PKG-INFO

 Metadata-Version: 2.2
 Name: cellbrowser
-Version: 1.2.12
+Version: 1.2.13
 Summary: UCSC Cellbrowser, an interactive browser for single cell data. Includes converters and basic pipelines for text files, Seurat, Scanpy and Cellranger.
@@ -5,0 +5,0 @@ Home-page: https://github.com/maximilianh/cellBrowser

src/cbPyLib/cellbrowser/_version.py

@@ -11,7 +11,7 @@
 {
- "date": "2025-02-14T09:13:15-0800",
+ "date": "2025-04-17T11:03:49-0700",
  "dirty": false,
  "error": null,
- "full-revisionid": "5cefb922e5dbfbcb3bc1764cf085d0c834d28e6f",
- "version": "1.2.12"
+ "full-revisionid": "269165a1189622408b651ea17b8cce70920bfdeb",
+ "version": "1.2.13"
 }
@@ -18,0 +18,0 @@ '''  # END VERSION_JSON

src/cbPyLib/cellbrowser/cbWeb/css/cellBrowser.css

@@ -151,2 +151,3 @@ /* tsneViewer.js class definitions */
 .tpRibbonButton {
+        background-color: #ccc;
         padding:  1px 2px 1px 2px; 
@@ -153,0 +154,0 @@ border-radius: 4px;

src/cbPyLib/cellbrowser/R/cellbrowser.R

@@ -91,2 +91,6 @@ # Build a UCSC cell browser website from a \code{Seurat} object
         img = GetImage(obj, mode="raw", image=name); 
+        if (is.null(img)) {
+            message("The image is not a bitmap image, cannot export yet.")
+            return(embeddings.conf)
+        }
         imgPath <- file.path(outDir, paste0(name, ".jpg"))
@@ -93,0 +97,0 @@ message("Writing image ", imgPath)

src/cbPyLib/cellbrowser/sampleConfig/cellbrowser.conf

@@ -69,3 +69,5 @@ # --------- REQUIRED SETTINGS --------------
             # you can automatically switch on coloring on a meta data field whenever a layout is activated
-            "colorOnMeta":"neuralCluster"
+            "colorOnMeta":"neuralCluster",
+            # you can manually add text strings
+            "annots": [ [17,1, "Hi there!"], [10,5, "Yes"]]
     },
@@ -201,1 +203,5 @@ ]
 #sources=["direct"]
+#
+# start up in split screen mode. The second screen can be colored by meta or gene and can show a different coord set
+# split = {"coords" : "umap", "meta":"spatial"}
+# split = {"gene":"HOXA2"}

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Improved metrics

Total package byte prevSize

21218468

0.04%

Lines of code

65358

0.25%