Python package for the DEEPCON contact prediction tool at https://github.com/ba-lab/DEEPCON
pip3 install deepcon
wget https://raw.githubusercontent.com/ba-lab/deepcon-package/master/deepcon/test/1a0tP0.aln
wget https://raw.githubusercontent.com/ba-lab/deepcon-package/master/deepcon/weights-rdd-covariance.hdf5
python3
import deepcon
from deepcon import deepconcovariance
deepconcovariance.main("1a0tP0.aln","1a0tP0.rr")
To print the contact map as image, add the image name as the last parameter (optional)
deepconcovariance.main("1a0tP0.aln","1a0tP0.rr", "1a0tP0.png")
Example contact map as an image:
Chase Richards
Email: CNRichards@gmail.com
FAQs
Protein Contact Prediction using Dilated Convolutional Neural Networks with Dropout
We found that deepcon demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 2 open source maintainers collaborating on the project.
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