disba

disba

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disba is a computationally efficient Python library for the modeling of surface wave dispersion that implements a subset of codes from Computer Programs in Seismology (CPS) <http://www.eas.slu.edu/eqc/eqccps.html>__ in Python compiled just-in-time <https://en.wikipedia.org/wiki/Just-in-time_compilation>__ with numba <https://numba.pydata.org/>. Such implementation alleviates the usual prerequisite for a Fortran compiler needed by other libraries also based on CPS (e.g., pysurf96 <https://github.com/miili/pysurf96>, srfpython <https://github.com/obsmax/srfpython>__ and PyLayeredModel <https://github.com/harrymd/PyLayeredModel>__) which often leads to further installation troubleshooting, especially on Windows platform.

disba aims to be lightweight and portable without compromising on the performance. For both Rayleigh-wave and Love-wave, it is significantly faster than CPS's surf96 program compiled with f2py <https://np.org/devdocs/f2py/index.html>__, noticeably for large number of layers.

.. list-table::

• • |Perf Rayleigh|
  • |Perf Love|

Features

Forward modeling:

• Compute Rayleigh-wave phase or group dispersion curves using Dunkin's matrix or fast delta matrix algorithms,
• Compute Love-wave phase or group dispersion curves using Thomson-Haskell method,
• Compute Rayleigh-wave ellipticity.

Eigenfunctions and sensitivity kernels:

• Compute Rayleigh- and Love- wave eigenfunctions,
• Compute Rayleigh- and Love- wave phase or group velocity, and Rayleigh-wave ellipticity sensitivity kernels with respect to layer thickness, P- and S- wave velocities, and density.

Installation

The recommended way to install disba and all its dependencies is through the Python Package Index:

.. code:: bash

pip install disba[full] --user

Otherwise, clone and extract the package, then run from the package location:

.. code:: bash

pip install .[full] --user

To test the integrity of the installed package, check out this repository and run:

.. code:: bash

pytest

Documentation

Refer to the online documentation <https://keurfonluu.github.io/disba/>__ for detailed description of the API and examples.

Alternatively, the documentation can be built using Sphinx <https://www.sphinx-doc.org/en/master/>__:

.. code:: bash

pip install -r doc/requirements.txt sphinx-build -b html doc/source doc/build

Usage

The following example computes the Rayleigh- and Love- wave phase velocity dispersion curves for the 3 first modes.

.. code:: python

import numpy as np from disba import PhaseDispersion

Velocity model

thickness, Vp, Vs, density

km, km/s, km/s, g/cm3

velocity_model = np.array([ [10.0, 7.00, 3.50, 2.00], [10.0, 6.80, 3.40, 2.00], [10.0, 7.00, 3.50, 2.00], [10.0, 7.60, 3.80, 2.00], [10.0, 8.40, 4.20, 2.00], [10.0, 9.00, 4.50, 2.00], [10.0, 9.40, 4.70, 2.00], [10.0, 9.60, 4.80, 2.00], [10.0, 9.50, 4.75, 2.00], ])

Periods must be sorted starting with low periods

t = np.logspace(0.0, 3.0, 100)

Compute the 3 first Rayleigh- and Love- wave modal dispersion curves

Fundamental mode corresponds to mode 0

pd = PhaseDispersion(*velocity_model.T) cpr = [pd(t, mode=i, wave="rayleigh") for i in range(3)] cpl = [pd(t, mode=i, wave="love") for i in range(3)]

pd returns a namedtuple (period, velocity, mode, wave, type)

.. list-table::

• • |Sample Rayleigh|
  • |Sample Love|

Likewise, GroupDispersion can be used for group velocity.

disba's API is consistent across all its classes which are initialized and called in the same fashion. Thus, eigenfunctions are calculated as follow:

.. code:: python

from disba import EigenFunction

eigf = EigenFunction(*velocity_model.T) eigr = eigf(20.0, mode=0, wave="rayleigh") eigl = eigf(20.0, mode=0, wave="love")

eigf returns a namedtuple

- (depth, ur, uz, tz, tr, period, mode) for Rayleigh-wave

- (depth, uu, tt, period, mode) for Love-wave

.. list-table::

• • |Eigen Rayleigh|
  • |Eigen Love|

Phase velocity sensitivity kernels (GroupSensitivity for group velocity):

.. code:: python

from disba import PhaseSensitivity

ps = PhaseSensitivity(*velocity_model.T) parameters = ["thickness", "velocity_p", "velocity_s", "density"] skr = [ps(20.0, mode=0, wave="rayleigh", parameter=parameter) for parameter in parameters] skl = [ps(20.0, mode=0, wave="love", parameter=parameter) for parameter in parameters]

ps returns a namedtuple (depth, kernel, period, velocity, mode,wave, type, parameter)

.. list-table::

• • |Kernel Rayleigh|
  • |Kernel Love|

Ellipticity and ellipticity sensitivity kernels:

.. code:: python

from disba import Ellipticity, EllipticitySensitivity

ell = Ellipticity(*velocity_model.T) rel = ell(t, mode=0)

ell returns a namedtuple (period, ellipticity, mode)

es = EllipticitySensitivity(*velocity_model.T) ek = [es(20.0, mode=0, parameter=parameter) for parameter in parameters]

es returns a namedtuple (depth, kernel, period, velocity, mode, wave, type, parameter)

.. list-table::

• • |Sample Ellipticity|
  • |Kernel Ellipticity|

Contributing

Please refer to the Contributing Guidelines <https://github.com/keurfonluu/disba/blob/master/CONTRIBUTING.rst>__ to see how you can help. This project is released with a Code of Conduct <https://github.com/keurfonluu/disba/blob/master/CODE_OF_CONDUCT.rst>__ which you agree to abide by when contributing.

.. |License| image:: https://img.shields.io/github/license/keurfonluu/disba :target: https://github.com/keurfonluu/disba/blob/master/LICENSE

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.. |Codecov| image:: https://img.shields.io/codecov/c/github/keurfonluu/disba.svg?style=flat :target: https://codecov.io/gh/keurfonluu/disba

.. |DOI| image:: https://zenodo.org/badge/DOI/10.5281/zenodo.3987395.svg?style=flat :target: https://doi.org/10.5281/zenodo.3987395

.. |Build| image:: https://img.shields.io/github/workflow/status/keurfonluu/disba/Python%20package :target: https://github.com/keurfonluu/disba

.. |Travis| image:: https://img.shields.io/travis/com/keurfonluu/disba/master?label=docs :target: https://keurfonluu.github.io/disba/

.. |Awesome| image:: https://img.shields.io/badge/awesome-yes-C6A4BF :target: https://github.com/softwareunderground/awesome-open-geoscience

.. |Perf Rayleigh| image:: https://raw.githubusercontent.com/keurfonluu/disba/e29865fb0b385b295bc55b733a138a741787879d/.github/perf_rayleigh.svg :alt: perf-rayleigh

.. |Perf Love| image:: https://raw.githubusercontent.com/keurfonluu/disba/5d23a8bb3967fd59c1a38b59ce1bf800749c7eb2/.github/perf_love.svg :alt: perf-love

.. |Sample Rayleigh| image:: https://raw.githubusercontent.com/keurfonluu/disba/5d23a8bb3967fd59c1a38b59ce1bf800749c7eb2/.github/sample_rayleigh.svg :alt: sample-rayleigh

.. |Sample Love| image:: https://raw.githubusercontent.com/keurfonluu/disba/5d23a8bb3967fd59c1a38b59ce1bf800749c7eb2/.github/sample_love.svg :alt: sample-love

.. |Sample Ellipticity| image:: https://raw.githubusercontent.com/keurfonluu/disba/5f9b95a144e3751ffa98b5860663af874c02ae1c/.github/sample_ellipticity.svg :alt: sample-ellipticity

.. |Eigen Rayleigh| image:: https://raw.githubusercontent.com/keurfonluu/disba/5f9b95a144e3751ffa98b5860663af874c02ae1c/.github/eigen_rayleigh.svg :alt: eigen-rayleigh

.. |Eigen Love| image:: https://raw.githubusercontent.com/keurfonluu/disba/5f9b95a144e3751ffa98b5860663af874c02ae1c/.github/eigen_love.svg :alt: eigen-love

.. |Kernel Rayleigh| image:: https://raw.githubusercontent.com/keurfonluu/disba/5f9b95a144e3751ffa98b5860663af874c02ae1c/.github/kernel_rayleigh.svg :alt: kernel-rayleigh

.. |Kernel Love| image:: https://raw.githubusercontent.com/keurfonluu/disba/5f9b95a144e3751ffa98b5860663af874c02ae1c/.github/kernel_love.svg :alt: kernel-love

.. |Kernel Ellipticity| image:: https://raw.githubusercontent.com/keurfonluu/disba/5f9b95a144e3751ffa98b5860663af874c02ae1c/.github/kernel_ellipticity.svg :alt: kernel-ellipticity