galah-python - pypi Package Compare versions

Comparing version 0.8.3 to 0.9.0

galah/.idea/.gitignore

+# Default ignored files
+/shelf/
+/workspace.xml

galah/.idea/inspectionProfiles/profiles_settings.xml

+<component name="InspectionProjectProfileManager">
+  <settings>
+    <option name="USE_PROJECT_PROFILE" value="false" />
+    <version value="1.0" />
+  </settings>
+</component>

galah/.idea/misc.xml

+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="ProjectRootManager" version="2" project-jdk-name="Python 3.10 Conda Environment" project-jdk-type="Python SDK" />
+</project>

galah/.idea/modules.xml

+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="ProjectModuleManager">
+    <modules>
+      <module fileurl="file://$PROJECT_DIR$/.idea/galah.iml" filepath="$PROJECT_DIR$/.idea/galah.iml" />
+    </modules>
+  </component>
+</project>

galah/.idea/vcs.xml

+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="VcsDirectoryMappings">
+    <mapping directory="$PROJECT_DIR$/../../.." vcs="Git" />
+  </component>
+</project>

galah/node_config_0.1.0.csv

+atlas,system,api_name,api_url,called_by,functional
+Australia,collections,collections_collections,https://collections.ala.org.au/ws/collection,show_all-collections,TRUE
+Australia,collections,collections_datasets,https://collections.ala.org.au/ws/dataResource,show_all-datasets,TRUE
+Australia,collections,collections_providers,https://collections.ala.org.au/ws/dataProvider,show_all-providers,TRUE
+Australia,data-quality,profiles_all,https://data-quality-service.ala.org.au/api/v1/data-profiles,show_all-profiles,TRUE
+Australia,data-quality,profiles_lookup,https://data-quality-service.ala.org.au/api/v1/quality/activeProfile?profileName={profile},show_values-profiles,TRUE
+Australia,doi,doi_download,https://doi.ala.org.au/doi/{doi_string}/download,doi_download,TRUE
+Australia,images,image_licences,https://images.ala.org.au/ws/licence,show_all-licences,TRUE
+Australia,images,image_metadata,https://images.ala.org.au/ws/image/{id},media_metadata,TRUE
+Australia,lists,lists_all,https://lists.ala.org.au/ws/speciesList,show_all-lists,TRUE
+Australia,lists,lists_lookup,https://lists.ala.org.au/ws/speciesListItems/{list_id},show_values-lists,TRUE
+Australia,logger,logger_reasons,https://api.ala.org.au/logger/service/logger/reasons,show_all-reasons,TRUE
+Australia,name-matching,names_lookup,https://namematching-ws.ala.org.au/api/getByTaxonID,search_identifiers,TRUE
+Australia,name-matching,names_search_multiple,https://namematching-ws.ala.org.au/api/searchByClassification,search_taxa,TRUE
+Australia,name-matching,names_search_single,https://namematching-ws.ala.org.au/api/search?q={name},search_taxa,TRUE
+Australia,records,records_assertions,https://biocache-ws.ala.org.au/ws/assertions/codes,show_all-assertions,TRUE
+Australia,records,records_counts,https://biocache-ws.ala.org.au/ws/occurrences/search,atlas_counts,TRUE
+Australia,records,records_facets,https://biocache-ws.ala.org.au/ws/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+Australia,records,records_fields,https://biocache-ws.ala.org.au/ws/index/fields,show_all-fields,TRUE
+Australia,records,records_occurrences,https://biocache-ws.ala.org.au/ws/occurrences/offline/download,atlas_occurrences,TRUE
+Australia,records,records_query,https://biocache-ws.ala.org.au/ws/webportal/params,atlas_occurrences,TRUE
+Australia,records,records_species,https://biocache-ws.ala.org.au/ws/occurrences/facets/download,atlas_species,TRUE
+Australia,spatial,spatial_layers,https://spatial.ala.org.au/ws/layers,show_all-fields,TRUE
+Australia,species,species_children,https://bie-ws.ala.org.au/ws/childConcepts/{id},atlas_taxonomy,TRUE
+Australia,species,species_lookup,https://bie-ws.ala.org.au/ws/species/{id},atlas_taxonomy,TRUE
+Austria,collections,collections_collections,https://collectory.biodiversityatlas.at/ws/collection,show_all-collections,TRUE
+Brazil,collections,collections_collections,https://collectory.sibbr.gov.br/collectory/ws/collection,show_all-collections,TRUE
+Brazil,collections,collections_datasets,https://collectory.sibbr.gov.br/collectory/ws/dataResource,show_all-datasets,TRUE
+Brazil,collections,collections_providers,https://collectory.sibbr.gov.br/collectory/ws/dataProvider,show_all-providers,TRUE
+Brazil,images,image_licences,https://images.sibbr.gov.br/images/ws/licence,show_all-licences,TRUE
+Brazil,images,image_metadata,https://images.sibbr.gov.br/images/ws/image/,media_metadata,FALSE
+Brazil,lists,lists_all,https://specieslist.sibbr.gov.br/ws/speciesList/,show_all-lists,TRUE
+Brazil,lists,lists_lookup,https://specieslist.sibbr.gov.br/ws/speciesListItems/{list_id},show_values-lists,TRUE
+Brazil,records,records_assertions,https://biocache-service.sibbr.gov.br/biocache-service/assertions/codes,show_all-assertions,TRUE
+Brazil,records,records_counts,https://biocache-service.sibbr.gov.br/biocache-service/occurrences/search,atlas_counts,TRUE
+Brazil,records,records_facets,https://biocache-service.sibbr.gov.br/biocache-service/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+Brazil,records,records_fields,https://biocache-service.sibbr.gov.br/biocache-service/index/fields,show_all-fields,TRUE
+Brazil,records,records_occurrences,https://biocache-service.sibbr.gov.br/biocache-service/occurrences/offline/download,atlas_occurrences,TRUE
+Brazil,records,records_query,https://biocache-service.sibbr.gov.br/biocache-service/webportal/params,atlas_occurrences,TRUE
+Brazil,records,records_species,https://biocache-service.sibbr.gov.br/biocache-service/occurrences/facets/download,atlas_species,TRUE
+Brazil,spatial,spatial_layers,https://portal-espacial.sibbr.gov.br/spatial-hub/layers,show_all-fields,TRUE
+Brazil,species,names_search_single,https://bie-webservice.sibbr.gov.br/bie-index/search?q={name}&pageSize=5,search_taxa,TRUE
+Brazil,species,species_children,https://bie-webservice.sibbr.gov.br/bie-index/childConcepts/,atlas_taxonomy,TRUE
+Brazil,species,species_lookup,https://bie-webservice.sibbr.gov.br/bie-index/species,atlas_taxonomy,TRUE
+Spain,collections,collections_collections,https://colecciones.gbif.es/ws/collection,show_all-collections,TRUE
+Spain,collections,collections_datasets,https://colecciones.gbif.es/ws/dataResource,show_all-datasets,TRUE
+Spain,collections,collections_providers,https://colecciones.gbif.es/ws/dataProvider,show_all-providers,TRUE
+Spain,doi,doi_download,https://doi.gbif.es/doi/{doi_string}/download,doi_download,TRUE
+Spain,images,image_licences,https://imagenes.gbif.es/ws/licence,show_all-licences,TRUE
+Spain,images,image_metadata,https://imagenes.gbif.es/ws/image/,media_metadata,FALSE
+Spain,lists,lists_all,https://listas.gbif.es/ws/speciesList,show_all-lists,TRUE
+Spain,lists,lists_lookup,https://listas.gbif.es/ws/speciesListItems/{list_id},show_values-lists,TRUE
+Spain,data-quality,profiles_all,https://data-quality.gbif.es/api/v1/data-profiles,show_all-profiles,TRUE
+Spain,data-quality,profiles_lookup,https://data-quality.gbif.es/api/v1/quality/activeProfile?profileName={profile},show_values-profiles,TRUE
+Spain,logger,logger_reasons,https://logger.gbif.es/service/logger/reasons,show_all-reasons,TRUE
+Spain,name-matching,names_lookup,https://name-matching.gbif.es/api/getByTaxonID,search_identifiers,TRUE
+Spain,name-matching,names_search_multiple,https://name-matching.gbif.es/api/searchByClassification,search_taxa,TRUE
+Spain,name-matching,names_search_single,https://name-matching.gbif.es/api/search?q={name},search_taxa,TRUE
+Spain,records,records_assertions,https://registros-ws.gbif.es/assertions/codes,show_all-assertions,TRUE
+Spain,records,records_counts,https://registros-ws.gbif.es/occurrences/search,atlas_counts,TRUE
+Spain,records,records_facets,https://registros-ws.gbif.es/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+Spain,records,records_fields,https://registros-ws.gbif.es/index/fields,show_all-fields,TRUE
+Spain,records,records_occurrences,https://registros-ws.gbif.es/occurrences/offline/download,atlas_occurrences,TRUE
+Spain,records,records_query,https://registros-ws.gbif.es/webportal/params,atlas_occurrences,TRUE
+Spain,records,records_species,https://registros-ws.gbif.es/occurrences/facets/download,atlas_species,TRUE
+Spain,spatial,spatial_layers,https://espacial.gbif.es/ws/layers,show_all-fields,TRUE
+Spain,species,species_children,https://especies-ws.gbif.es/childConcepts/,atlas_taxonomy,TRUE
+Spain,species,species_lookup,https://especies-ws.gbif.es/species,atlas_taxonomy,TRUE

galah/node_config_dest.csv

+atlas,system,api_name,api_url,called_by,functional,method
+Australia,collections,collections_collections,https://api.test.ala.org.au/common/collectory/collection,show_all-collections,TRUE,GET
+Australia,collections,collections_datasets,https://api.test.ala.org.au/common/collectory/dataResource,show_all-datasets,TRUE,GET
+Australia,collections,collections_providers,https://api.test.ala.org.au/common/collectory/dataProvider,show_all-providers,TRUE,GET
+Australia,data-quality,profiles_all,https://api.test.ala.org.au/common/data-quality/data-profiles,show_all-profiles,TRUE,GET
+Australia,data-quality,profiles_lookup,https://api.test.ala.org.au/common/data-quality/quality/activeProfile?profilename={profile},show_values-profiles,TRUE,GET
+Australia,doi,doi_download,https://api.test.ala.org.au/common/doi/{doi_string}/download,doi_download,TRUE,GET
+Australia,images,image_licences,https://api.test.ala.org.au/common/images/licence,show_all-licences,TRUE,GET
+Australia,images,image_metadata,https://api.test.ala.org.au/common/images/image/{id},media_metadata,TRUE,GET
+Australia,lists,lists_all,https://api.test.ala.org.au/common/lists/speciesList,show_all-lists,TRUE,GET
+Australia,lists,lists_lookup,https://api.test.ala.org.au/common/lists/speciesListItems/{list_id},show_values-lists,TRUE,GET
+Australia,logger,logger_reasons,https://api.test.ala.org.au/common/logger/reasons,show_all-reasons,TRUE,GET
+Australia,name-matching,names_lookup,https://api.test.ala.org.au/common/name-matching/getByTaxonID,search_identifiers,TRUE,GET
+Australia,name-matching,names_search_multiple,https://api.test.ala.org.au/common/name-matching/searchByClassification,search_taxa,TRUE,GET
+Australia,name-matching,names_search_single,https://api.test.ala.org.au/common/name-matching/search?q={name},search_taxa,TRUE,GET
+Australia,records,records_assertions,https://api.test.ala.org.au/common/biocache/assertions/codes,show_all-assertions,TRUE,GET
+Australia,records,records_counts,https://api.test.ala.org.au/common/biocache/occurrences/search,atlas_counts,TRUE,GET
+Australia,records,records_facets,https://api.test.ala.org.au/common/biocache/occurrences/facets,"atlas_counts, show_values-fields",TRUE,GET
+Australia,records,records_fields,https://api.test.ala.org.au/common/biocache/index/fields,show_all-fields,TRUE,GET
+Australia,records,records_occurrences,https://api.test.ala.org.au/common/biocache/occurrences/offline/download,atlas_occurrences,TRUE,GET
+Australia,records,records_query,https://api.test.ala.org.au,atlas_occurrences,FALSE,GET
+Australia,records,records_species,https://api.test.ala.org.au/occurrences/occurrences/facets/download,atlas_species,TRUE,GET
+Australia,spatial,spatial_layers,https://api.test.ala.org.au/common/spatial/layers,show_all-fields,TRUE,GET
+Australia,species,species_children,https://api.test.ala.org.au/common/bie/childConcepts/{id},atlas_taxonomy,TRUE,GET
+Australia,species,species_lookup,https://api.test.ala.org.au/common/bie/species/{id},atlas_taxonomy,TRUE,GET
+Austria,collections,collections_collections,https://collectory.biodiversityatlas.at/ws/collection,show_all-collections,TRUE,GET
+Austria,collections,collections_datasets,https://collectory.biodiversityatlas.at/ws/dataResource,show_all-datasets,TRUE,GET
+Austria,collections,collections_providers,https://collectory.biodiversityatlas.at/ws/dataProvider,show_all-providers,TRUE,GET
+Austria,images,image_licences,https://images.biodiversityatlas.at/ws/licence,show_all-licences,TRUE,GET
+Austria,images,image_metadata,https://images.biodiversityatlas.at/ws/image/,media_metadata,FALSE,GET
+Austria,lists,lists_all,https://lists.biodiversityatlas.at/ws/speciesList/,show_all-lists,TRUE,GET
+Austria,lists,lists_lookup,https://lists.biodiversityatlas.at/ws/speciesListItems/{list_id},show_values-lists,TRUE,GET
+Austria,logger,logger_reasons,https://logger.biodiversityatlas.at/service/logger/reasons,show_all-reasons,TRUE,GET
+Austria,records,records_assertions,https://biocache-ws.biodiversityatlas.at/assertions/codes,show_all-assertions,TRUE,GET
+Austria,records,records_counts,https://biocache-ws.biodiversityatlas.at/occurrences/search,atlas_counts,TRUE,GET
+Austria,records,records_facets,https://biocache-ws.biodiversityatlas.at/occurrence/facets,"atlas_counts, show_values-fields",TRUE,GET
+Austria,records,records_fields,https://biocache-ws.biodiversityatlas.at/index/fields,show_all-fields,TRUE,GET
+Austria,records,records_occurrences,https://biocache-ws.biodiversityatlas.at/occurrences/offline/download,atlas_occurrences,TRUE,GET
+Austria,records,records_query,https://biocache-ws.biodiversityatlas.at/webportal/params,atlas_occurrences,TRUE,GET
+Austria,records,records_species,https://biocache-ws.biodiversityatlas.at/occurrences/facets/download,atlas_species,TRUE,GET
+Austria,spatial,spatial_layers,https://spatial.biodiversityatlas.at/ws/layers,show_all-fields,TRUE,GET
+Austria,species,names_search_single,https://bie-ws.biodiversityatlas.at/search?q={name}&pageSize=5,search_taxa,TRUE,GET
+Austria,species,species_children,https://bie-ws.biodiversityatlas.at/childConcepts/,atlas_taxonomy,TRUE,GET
+Austria,species,species_lookup,https://bie-ws.biodiversityatlas.at/species,atlas_taxonomy,TRUE,GET
+Brazil,collections,collections_collections,https://collectory.sibbr.gov.br/collectory/ws/collection,show_all-collections,TRUE,GET
+Brazil,collections,collections_datasets,https://collectory.sibbr.gov.br/collectory/ws/dataResource,show_all-datasets,TRUE,GET
+Brazil,collections,collections_providers,https://collectory.sibbr.gov.br/collectory/ws/dataProvider,show_all-providers,TRUE,GET
+Brazil,images,image_licences,https://images.sibbr.gov.br/images/ws/licence,show_all-licences,TRUE,GET
+Brazil,images,image_metadata,https://images.sibbr.gov.br/images/ws/image/,media_metadata,FALSE,GET
+Brazil,lists,lists_all,https://specieslist.sibbr.gov.br/ws/speciesList/,show_all-lists,TRUE,GET
+Brazil,lists,lists_lookup,https://specieslist.sibbr.gov.br/ws/speciesListItems/{list_id},show_values-lists,TRUE,GET
+Brazil,records,records_assertions,https://biocache-service.sibbr.gov.br/biocache-service/assertions/codes,show_all-assertions,TRUE,GET
+Brazil,records,records_counts,https://biocache-service.sibbr.gov.br/biocache-service/occurrences/search,atlas_counts,TRUE,GET
+Brazil,records,records_facets,https://biocache-service.sibbr.gov.br/biocache-service/occurrence/facets,"atlas_counts, show_values-fields",TRUE,GET
+Brazil,records,records_fields,https://biocache-service.sibbr.gov.br/biocache-service/index/fields,show_all-fields,TRUE,GET
+Brazil,records,records_occurrences,https://biocache-service.sibbr.gov.br/biocache-service/occurrences/offline/download,atlas_occurrences,TRUE,GET
+Brazil,records,records_query,https://biocache-service.sibbr.gov.br/biocache-service/webportal/params,atlas_occurrences,TRUE,GET
+Brazil,records,records_species,https://biocache-service.sibbr.gov.br/biocache-service/occurrences/facets/download,atlas_species,TRUE,GET
+Brazil,spatial,spatial_layers,https://portal-espacial.sibbr.gov.br/spatial-hub/layers,show_all-fields,TRUE,GET
+Brazil,species,names_search_single,https://bie-webservice.sibbr.gov.br/bie-index/search?q={name}&pageSize=5,search_taxa,TRUE,GET
+Brazil,species,species_children,https://bie-webservice.sibbr.gov.br/bie-index/childConcepts/,atlas_taxonomy,TRUE,GET
+Brazil,species,species_lookup,https://bie-webservice.sibbr.gov.br/bie-index/species,atlas_taxonomy,TRUE,GET
+France,collections,collections_collections,https://openobs.mnhn.fr/collectory/ws/collection,show_all-collections,TRUE,GET
+France,collections,collections_datasets,https://openobs.mnhn.fr/collectory/ws/dataResource,show_all-datasets,TRUE,GET
+France,collections,collections_providers,https://openobs.mnhn.fr/collectory/ws/dataProvider,show_all-providers,TRUE,GET
+France,records,records_assertions,https://openobs.mnhn.fr/biocache-service/assertions/codes,show_all-assertions,TRUE,GET
+France,records,records_counts,https://openobs.mnhn.fr/biocache-service/occurrences/search,atlas_counts,TRUE,GET
+France,records,records_facets,https://openobs.mnhn.fr/biocache-service/occurrence/facets,"atlas_counts, show_values-fields",TRUE,GET
+France,records,records_fields,https://openobs.mnhn.fr/biocache-service/index/fields,show_all-fields,TRUE,GET
+France,records,records_occurrences,https://openobs.mnhn.fr/biocache-service/occurrences/offline/download,atlas_occurrences,TRUE,GET
+France,records,records_query,https://openobs.mnhn.fr/biocache-service/webportal/params,atlas_occurrences,TRUE,GET
+France,records,records_species,https://openobs.mnhn.fr/biocache-service/occurrences/facets/download,atlas_species,TRUE,GET
+France,name-matching,names_lookup,https://taxref.mnhn.fr/api/taxa/,search_identifiers,TRUE,GET
+France,name-matching,names_search_single,https://taxref.mnhn.fr/api/taxa/search?scientificNames={name}&page=1&size=5,search_taxa,TRUE,GET
+Global,species,names_search_single,https://api.gbif.org/v1/species/match?verbose=FALSE&name={name},search_taxa,TRUE,GET
+Global,collections,collections_providers,https://api.gbif.org/v1/organization,show_all-providers,TRUE,GET
+Global,collections,collections_collections,https://api.gbif.org/v1/grscicoll/collection,show_all-collections,TRUE,GET
+Global,collections,collections_collections_search,https://api.gbif.org/v1/grscicoll/search,search_all-collections,TRUE,GET
+Global,collections,collections_datasets,https://api.gbif.org/v1/dataset,show_all-datasets,TRUE,GET
+Global,collections,collections_datasets_search,https://api.gbif.org/v1/dataset/search,search_all-datasets,TRUE,GET
+Global,records,records_counts,https://api.gbif.org/v1/occurrence/search,"atlas_counts, show_values-fields",TRUE,GET
+Global,records,records_occurrences,https://api.gbif.org/v1/occurrence/download/request,atlas_occurrences,TRUE,POST
+Spain,collections,collections_collections,https://colecciones.gbif.es/ws/collection,show_all-collections,TRUE,GET
+Spain,collections,collections_datasets,https://colecciones.gbif.es/ws/dataResource,show_all-datasets,TRUE,GET
+Spain,collections,collections_providers,https://colecciones.gbif.es/ws/dataProvider,show_all-providers,TRUE,GET
+Spain,doi,doi_download,https://doi.gbif.es/doi/{doi_string}/download,doi_download,TRUE,GET
+Spain,images,image_licences,https://imagenes.gbif.es/ws/licence,show_all-licences,TRUE,GET
+Spain,images,image_metadata,https://imagenes.gbif.es/ws/image/,media_metadata,FALSE,GET
+Spain,lists,lists_all,https://listas.gbif.es/ws/speciesList,show_all-lists,TRUE,GET
+Spain,lists,lists_lookup,https://listas.gbif.es/ws/speciesListItems/{list_id},show_values-lists,TRUE,GET
+Spain,data-quality,profiles_all,https://data-quality.gbif.es/api/v1/data-profiles,show_all-profiles,TRUE,GET
+Spain,data-quality,profiles_lookup,https://data-quality.gbif.es/api/v1/quality/activeProfile?profileName={profile},show_values-profiles,TRUE,GET
+Spain,logger,logger_reasons,https://logger.gbif.es/service/logger/reasons,show_all-reasons,TRUE,GET
+Spain,name-matching,names_lookup,https://name-matching.gbif.es/api/getByTaxonID,search_identifiers,TRUE,GET
+Spain,name-matching,names_search_multiple,https://name-matching.gbif.es/api/searchByClassification,search_taxa,TRUE,GET
+Spain,name-matching,names_search_single,https://name-matching.gbif.es/api/search?q={name},search_taxa,TRUE,GET
+Spain,records,records_assertions,https://registros-ws.gbif.es/assertions/codes,show_all-assertions,TRUE,GET
+Spain,records,records_counts,https://registros-ws.gbif.es/occurrences/search,atlas_counts,TRUE,GET
+Spain,records,records_facets,https://registros-ws.gbif.es/occurrence/facets,"atlas_counts, show_values-fields",TRUE,GET
+Spain,records,records_fields,https://registros-ws.gbif.es/index/fields,show_all-fields,TRUE,GET
+Spain,records,records_occurrences,https://registros-ws.gbif.es/occurrences/offline/download,atlas_occurrences,TRUE,GET
+Spain,records,records_query,https://registros-ws.gbif.es/webportal/params,atlas_occurrences,TRUE,GET
+Spain,records,records_species,https://registros-ws.gbif.es/occurrences/facets/download,atlas_species,TRUE,GET
+Spain,spatial,spatial_layers,https://espacial.gbif.es/ws/layers,show_all-fields,TRUE,GET
+Spain,species,species_children,https://especies-ws.gbif.es/childConcepts/,atlas_taxonomy,TRUE,GET
+Spain,species,species_lookup,https://especies-ws.gbif.es/species,atlas_taxonomy,TRUE,GET

galah/node_config_dev.csv

+atlas,system,api_name,api_url,called_by,functional
+Australia,collections,collections_collections,https://collections.ala.org.au/ws/collection,show_all-collections,TRUE
+Australia,collections,collections_datasets,https://collections.ala.org.au/ws/dataResource,show_all-datasets,TRUE
+Australia,collections,collections_providers,https://collections.ala.org.au/ws/dataProvider,show_all-providers,TRUE
+Australia,data-quality,profiles_all,https://data-quality-service.ala.org.au/api/v1/data-profiles,show_all-profiles,TRUE
+Australia,data-quality,profiles_lookup,https://data-quality-service.ala.org.au/api/v1/quality/activeProfile?profileName={profile},show_values-profiles,TRUE
+Australia,doi,doi_download,https://doi.ala.org.au/doi/{doi_string}/download,doi_download,TRUE
+Australia,images,image_licences,https://images.ala.org.au/ws/licence,show_all-licences,TRUE
+Australia,images,image_metadata,https://images.ala.org.au/ws/image/{id},media_metadata,TRUE
+Australia,lists,lists_all,https://lists.ala.org.au/ws/speciesList,show_all-lists,TRUE
+Australia,lists,lists_lookup,https://lists.ala.org.au/ws/speciesListItems/{list_id},show_values-lists,TRUE
+Australia,logger,logger_reasons,https://api.ala.org.au/logger/service/logger/reasons,show_all-reasons,TRUE
+Australia,name-matching,names_lookup,https://namematching-ws.ala.org.au/api/getByTaxonID,search_identifiers,TRUE
+Australia,name-matching,names_search_multiple,https://namematching-ws.ala.org.au/api/searchByClassification,search_taxa,TRUE
+Australia,name-matching,names_search_single,https://namematching-ws.ala.org.au/api/search?q={name},search_taxa,TRUE
+Australia,records,records_assertions,https://biocache-ws.ala.org.au/ws/assertions/codes,show_all-assertions,TRUE
+Australia,records,records_counts,https://biocache-ws.ala.org.au/ws/occurrences/search,atlas_counts,TRUE
+Australia,records,records_facets,https://biocache-ws.ala.org.au/ws/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+Australia,records,records_fields,https://biocache-ws.ala.org.au/ws/index/fields,show_all-fields,TRUE
+Australia,records,records_occurrences,https://biocache-ws.ala.org.au/ws/occurrences/offline/download,atlas_occurrences,TRUE
+Australia,records,records_query,https://biocache-ws.ala.org.au/ws/webportal/params,atlas_occurrences,TRUE
+Australia,records,records_species,https://biocache-ws.ala.org.au/ws/occurrences/facets/download,atlas_species,TRUE
+Australia,spatial,spatial_layers,https://spatial.ala.org.au/ws/layers,show_all-fields,TRUE
+Australia,species,species_children,https://bie-ws.ala.org.au/ws/childConcepts/{id},atlas_taxonomy,TRUE
+Australia,species,species_lookup,https://bie-ws.ala.org.au/ws/species/{id},atlas_taxonomy,TRUE
+Austria,collections,collections_collections,https://collectory.biodiversityatlas.at/ws/collection,show_all-collections,TRUE
+Austria,collections,collections_datasets,https://collectory.biodiversityatlas.at/ws/dataResource,show_all-datasets,TRUE
+Austria,collections,collections_providers,https://collectory.biodiversityatlas.at/ws/dataProvider,show_all-providers,TRUE
+Austria,images,image_licences,https://images.biodiversityatlas.at/ws/licence,show_all-licences,TRUE
+Austria,images,image_metadata,https://images.biodiversityatlas.at/ws/image/,media_metadata,FALSE
+Austria,lists,lists_all,https://lists.biodiversityatlas.at/ws/speciesList/,show_all-lists,TRUE
+Austria,lists,lists_lookup,https://lists.biodiversityatlas.at/ws/speciesListItems/{list_id},show_values-lists,TRUE
+Austria,logger,logger_reasons,https://logger.biodiversityatlas.at/service/logger/reasons,show_all-reasons,TRUE
+Austria,records,records_assertions,https://biocache-ws.biodiversityatlas.at/assertions/codes,show_all-assertions,TRUE
+Austria,records,records_counts,https://biocache-ws.biodiversityatlas.at/occurrences/search,atlas_counts,TRUE
+Austria,records,records_facets,https://biocache-ws.biodiversityatlas.at/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+Austria,records,records_fields,https://biocache-ws.biodiversityatlas.at/index/fields,show_all-fields,TRUE
+Austria,records,records_occurrences,https://biocache-ws.biodiversityatlas.at/occurrences/offline/download,atlas_occurrences,TRUE
+Austria,records,records_query,https://biocache-ws.biodiversityatlas.at/webportal/params,atlas_occurrences,TRUE
+Austria,records,records_species,https://biocache-ws.biodiversityatlas.at/occurrences/facets/download,atlas_species,TRUE
+Austria,spatial,spatial_layers,https://spatial.biodiversityatlas.at/ws/layers,show_all-fields,TRUE
+Austria,species,names_search_single,https://bie-ws.biodiversityatlas.at/search?q={name}&pageSize=5,search_taxa,TRUE
+Austria,species,species_children,https://bie-ws.biodiversityatlas.at/childConcepts/,atlas_taxonomy,TRUE
+Austria,species,species_lookup,https://bie-ws.biodiversityatlas.at/species,atlas_taxonomy,TRUE
+Brazil,collections,collections_collections,https://collectory.sibbr.gov.br/collectory/ws/collection,show_all-collections,TRUE
+Brazil,collections,collections_datasets,https://collectory.sibbr.gov.br/collectory/ws/dataResource,show_all-datasets,TRUE
+Brazil,collections,collections_providers,https://collectory.sibbr.gov.br/collectory/ws/dataProvider,show_all-providers,TRUE
+Brazil,images,image_licences,https://images.sibbr.gov.br/images/ws/licence,show_all-licences,TRUE
+Brazil,images,image_metadata,https://images.sibbr.gov.br/images/ws/image/,media_metadata,FALSE
+Brazil,lists,lists_all,https://specieslist.sibbr.gov.br/ws/speciesList/,show_all-lists,TRUE
+Brazil,lists,lists_lookup,https://specieslist.sibbr.gov.br/ws/speciesListItems/{list_id},show_values-lists,TRUE
+Brazil,records,records_assertions,https://biocache-service.sibbr.gov.br/biocache-service/assertions/codes,show_all-assertions,TRUE
+Brazil,records,records_counts,https://biocache-service.sibbr.gov.br/biocache-service/occurrences/search,atlas_counts,TRUE
+Brazil,records,records_facets,https://biocache-service.sibbr.gov.br/biocache-service/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+Brazil,records,records_fields,https://biocache-service.sibbr.gov.br/biocache-service/index/fields,show_all-fields,TRUE
+Brazil,records,records_occurrences,https://biocache-service.sibbr.gov.br/biocache-service/occurrences/offline/download,atlas_occurrences,TRUE
+Brazil,records,records_query,https://biocache-service.sibbr.gov.br/biocache-service/webportal/params,atlas_occurrences,TRUE
+Brazil,records,records_species,https://biocache-service.sibbr.gov.br/biocache-service/occurrences/facets/download,atlas_species,TRUE
+Brazil,spatial,spatial_layers,https://portal-espacial.sibbr.gov.br/spatial-hub/layers,show_all-fields,TRUE
+Brazil,species,names_search_single,https://bie-webservice.sibbr.gov.br/bie-index/search?q={name}&pageSize=5,search_taxa,TRUE
+Brazil,species,species_children,https://bie-webservice.sibbr.gov.br/bie-index/childConcepts/,atlas_taxonomy,TRUE
+Brazil,species,species_lookup,https://bie-webservice.sibbr.gov.br/bie-index/species,atlas_taxonomy,TRUE
+Canada,collections,collections_collections,http://collections.canadensys.net/ws/collection,show_all-collections,TRUE
+Canada,collections,collections_datasets,http://collections.canadensys.net/ws/dataResource,show_all-datasets,TRUE
+Canada,collections,collections_providers,http://collections.canadensys.net/ws/dataProvider,show_all-providers,TRUE
+Canada,logger,logger_reasons,http://logger.canadensys.net/service/logger/reasons,show_all-reasons,TRUE
+Canada,records,records_assertions,http://explorer-ws.canadensys.net/assertions/codes,show_all-assertions,TRUE
+Canada,records,records_counts,http://explorer-ws.canadensys.net/occurrences/search,atlas_counts,TRUE
+Canada,records,records_facets,http://explorer-ws.canadensys.net/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+Canada,records,records_fields,http://explorer-ws.canadensys.net/index/fields,show_all-fields,TRUE
+Canada,records,records_occurrences,http://explorer-ws.canadensys.net/occurrences/offline/download,atlas_occurrences,TRUE
+Canada,records,records_query,http://explorer-ws.canadensys.net/webportal/params,atlas_occurrences,TRUE
+Canada,records,records_species,http://explorer-ws.canadensys.net/occurrences/facets/download,atlas_species,TRUE
+Canada,species,names_search_single,https://api.gbif.org/v1/species/match?verbose=FALSE&name={name},search_taxa,TRUE
+Estonia,collections,collections_collections,https://elurikkus.ee/collectory/ws/collection,show_all-collections,TRUE
+Estonia,collections,collections_datasets,https://elurikkus.ee/collectory/ws/dataResource,show_all-datasets,TRUE
+Estonia,collections,collections_providers,https://elurikkus.ee/collectory/ws/dataProvider,show_all-providers,TRUE
+Estonia,records,records_assertions,https://elurikkus.ee/biocache-service/assertions/codes,show_all-assertions,TRUE
+Estonia,records,records_counts,https://elurikkus.ee/biocache-service/occurrences/search,atlas_counts,TRUE
+Estonia,records,records_facets,https://elurikkus.ee/biocache-service/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+Estonia,records,records_fields,https://elurikkus.ee/biocache-service/index/fields,show_all-fields,TRUE
+Estonia,records,records_query,https://elurikkus.ee/biocache-service/webportal/params,atlas_occurrences,TRUE
+Estonia,records,records_species,https://elurikkus.ee/biocache-service/occurrences/facets/download,atlas_species,TRUE
+Estonia,species,names_search_single,https://elurikkus.ee/bie-index/search?q={name}&pageSize=5,search_taxa,TRUE
+Estonia,species,species_children,https://elurikkus.ee/bie-index/childConcepts/,atlas_taxonomy,TRUE
+Estonia,species,species_lookup,https://elurikkus.ee/bie-index/species,atlas_taxonomy,TRUE
+France,collections,collections_collections,https://openobs.mnhn.fr/collectory/ws/collection,show_all-collections,TRUE
+France,collections,collections_datasets,https://openobs.mnhn.fr/collectory/ws/dataResource,show_all-datasets,TRUE
+France,collections,collections_providers,https://openobs.mnhn.fr/collectory/ws/dataProvider,show_all-providers,TRUE
+France,records,records_assertions,https://openobs.mnhn.fr/biocache-service/assertions/codes,show_all-assertions,TRUE
+France,records,records_counts,https://openobs.mnhn.fr/biocache-service/occurrences/search,atlas_counts,TRUE
+France,records,records_facets,https://openobs.mnhn.fr/biocache-service/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+France,records,records_fields,https://openobs.mnhn.fr/biocache-service/index/fields,show_all-fields,TRUE
+France,records,records_occurrences,https://openobs.mnhn.fr/biocache-service/occurrences/offline/download,atlas_occurrences,TRUE
+France,records,records_query,https://openobs.mnhn.fr/biocache-service/webportal/params,atlas_occurrences,TRUE
+France,records,records_species,https://openobs.mnhn.fr/biocache-service/occurrences/facets/download,atlas_species,TRUE
+France,name-matching,names_lookup,https://taxref.mnhn.fr/api/taxa/,search_identifiers,TRUE
+France,name-matching,names_search_single,https://taxref.mnhn.fr/api/taxa/search?scientificNames={name}&page=1&size=5,search_taxa,TRUE
+Global,species,names_search_single,https://api.gbif.org/v1/species/match?verbose=FALSE&name={name},search_taxa,TRUE
+Global,collections,collections_providers,https://api.gbif.org/v1/organization,show_all-providers,TRUE
+Global,collections,collections_collections,https://api.gbif.org/v1/grscicoll/collection,show_all-collections,TRUE
+Global,collections,collections_collections_search,https://api.gbif.org/v1/grscicoll/search,search_all-collections,TRUE
+Global,collections,collections_datasets,https://api.gbif.org/v1/dataset,show_all-datasets,TRUE
+Global,collections,collections_datasets_search,https://api.gbif.org/v1/dataset/search,search_all-datasets,TRUE
+Global,records,records_counts,https://api.gbif.org/v1/occurrence/search,"atlas_counts, show_values-fields",TRUE
+Global,records,records_occurrences,https://api.gbif.org/v1/occurrence/download/request,atlas_occurrences,TRUE
+Guatemala,collections,collections_collections,https://snib.conap.gob.gt/colecciones/ws/collection,show_all-collections,TRUE
+Guatemala,collections,collections_datasets,https://snib.conap.gob.gt/colecciones/ws/dataResource,show_all-datasets,TRUE
+Guatemala,collections,collections_providers,https://snib.conap.gob.gt/colecciones/ws/dataProvider,show_all-providers,TRUE
+Guatemala,images,image_licences,https://imagenes.snib.conap.gob.gt/licence,show_all-licences,TRUE
+Guatemala,images,image_metadata,https://imagenes.snib.conap.gob.gt/image/,media_metadata,FALSE
+Guatemala,logger,logger_reasons,https://snib.conap.gob.gt/logger/service/logger/reasons,show_all-reasons,TRUE
+Guatemala,records,records_assertions,https://snib.conap.gob.gt/registros-ws/assertions/codes,show_all-assertions,TRUE
+Guatemala,records,records_counts,https://snib.conap.gob.gt/registros-ws/occurrences/search,atlas_counts,TRUE
+Guatemala,records,records_facets,https://snib.conap.gob.gt/registros-ws/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+Guatemala,records,records_fields,https://snib.conap.gob.gt/registros-ws/index/fields,show_all-fields,TRUE
+Guatemala,records,records_occurrences,https://snib.conap.gob.gt/registros-ws/occurrences/offline/download,atlas_occurrences,TRUE
+Guatemala,records,records_query,https://snib.conap.gob.gt/registros-ws/webportal/params,atlas_occurrences,TRUE
+Guatemala,records,records_species,https://snib.conap.gob.gt/registros-ws/occurrences/facets/download,atlas_species,TRUE
+Guatemala,spatial,spatial_layers,https://geoespacial.snib.conap.gob.gt/ws/layers,show_all-fields,TRUE
+Guatemala,species,names_search_single,https://snib.conap.gob.gt/especies-ws/search?q={name}&pageSize=5,search_taxa,TRUE
+Guatemala,species,species_children,https://snib.conap.gob.gt/especies-ws/childConcepts/,atlas_taxonomy,TRUE
+Guatemala,species,species_lookup,https://snib.conap.gob.gt/especies-ws/species,atlas_taxonomy,TRUE
+Portugal,collections,collections_collections,https://metadados.gbif.pt/ws/collection,show_all-collections,TRUE
+Portugal,collections,collections_datasets,https://metadados.gbif.pt/ws/dataResource,show_all-datasets,TRUE
+Portugal,collections,collections_providers,https://metadados.gbif.pt/ws/dataProvider,show_all-providers,TRUE
+Portugal,images,image_licences,https://imagens.gbif.pt/ws/licence,show_all-licences,TRUE
+Portugal,images,image_metadata,https://imagens.gbif.pt/ws/image/,media_metadata,FALSE
+Portugal,logger,logger_reasons,https://logger.gbif.pt/service/logger/reasons,show_all-reasons,TRUE
+Portugal,records,records_assertions,https://registos-ws.gbif.pt/assertions/codes,show_all-assertions,TRUE
+Portugal,records,records_counts,https://registos-ws.gbif.pt/occurrences/search,atlas_counts,TRUE
+Portugal,records,records_facets,https://registos-ws.gbif.pt/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+Portugal,records,records_fields,https://registos-ws.gbif.pt/index/fields,show_all-fields,TRUE
+Portugal,records,records_query,https://registos-ws.gbif.pt/webportal/params,atlas_occurrences,TRUE
+Portugal,records,records_species,https://registos-ws.gbif.pt/occurrences/facets/download,atlas_species,TRUE
+Portugal,spatial,spatial_layers,https://espacial.gbif.pt/ws/layers,show_all-fields,TRUE
+Portugal,species,names_search_single,https://api.gbif.org/v1/species/match?verbose=FALSE&name={name},search_taxa,TRUE
+Spain,collections,collections_collections,https://colecciones.gbif.es/ws/collection,show_all-collections,TRUE
+Spain,collections,collections_datasets,https://colecciones.gbif.es/ws/dataResource,show_all-datasets,TRUE
+Spain,collections,collections_providers,https://colecciones.gbif.es/ws/dataProvider,show_all-providers,TRUE
+Spain,doi,doi_download,https://doi.gbif.es/doi/{doi_string}/download,doi_download,TRUE
+Spain,images,image_licences,https://imagenes.gbif.es/ws/licence,show_all-licences,TRUE
+Spain,images,image_metadata,https://imagenes.gbif.es/ws/image/,media_metadata,FALSE
+Spain,lists,lists_all,https://listas.gbif.es/ws/speciesList,show_all-lists,TRUE
+Spain,lists,lists_lookup,https://listas.gbif.es/ws/speciesListItems/{list_id},show_values-lists,TRUE
+Spain,data-quality,profiles_all,https://data-quality.gbif.es/api/v1/data-profiles,show_all-profiles,TRUE
+Spain,data-quality,profiles_lookup,https://data-quality.gbif.es/api/v1/quality/activeProfile?profileName={profile},show_values-profiles,TRUE
+Spain,logger,logger_reasons,https://logger.gbif.es/service/logger/reasons,show_all-reasons,TRUE
+Spain,name-matching,names_lookup,https://name-matching.gbif.es/api/getByTaxonID,search_identifiers,TRUE
+Spain,name-matching,names_search_multiple,https://name-matching.gbif.es/api/searchByClassification,search_taxa,TRUE
+Spain,name-matching,names_search_single,https://name-matching.gbif.es/api/search?q={name},search_taxa,TRUE
+Spain,records,records_assertions,https://registros-ws.gbif.es/assertions/codes,show_all-assertions,TRUE
+Spain,records,records_counts,https://registros-ws.gbif.es/occurrences/search,atlas_counts,TRUE
+Spain,records,records_facets,https://registros-ws.gbif.es/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+Spain,records,records_fields,https://registros-ws.gbif.es/index/fields,show_all-fields,TRUE
+Spain,records,records_occurrences,https://registros-ws.gbif.es/occurrences/offline/download,atlas_occurrences,TRUE
+Spain,records,records_query,https://registros-ws.gbif.es/webportal/params,atlas_occurrences,TRUE
+Spain,records,records_species,https://registros-ws.gbif.es/occurrences/facets/download,atlas_species,TRUE
+Spain,spatial,spatial_layers,https://espacial.gbif.es/ws/layers,show_all-fields,TRUE
+Spain,species,species_children,https://especies-ws.gbif.es/childConcepts/,atlas_taxonomy,TRUE
+Spain,species,species_lookup,https://especies-ws.gbif.es/species,atlas_taxonomy,TRUE
+Sweden,collections,collections_collections,https://collections.biodiversitydata.se/ws/collection,show_all-collections,TRUE
+Sweden,collections,collections_datasets,https://collections.biodiversitydata.se/ws/dataResource,show_all-datasets,TRUE
+Sweden,collections,collections_providers,https://collections.biodiversitydata.se/ws/dataProvider,show_all-providers,TRUE
+Sweden,images,image_licences,https://images.biodiversitydata.se/licence,show_all-licences,TRUE
+Sweden,images,image_metadata,https://images.biodiversitydata.se/image/,media_metadata,FALSE
+Sweden,logger,logger_reasons,https://logger.biodiversitydata.se/service/logger/reasons,show_all-reasons,TRUE
+Sweden,records,records_assertions,https://records.biodiversitydata.se/ws/assertions/codes,show_all-assertions,TRUE
+Sweden,records,records_counts,https://records.biodiversitydata.se/ws/occurrences/search,atlas_counts,TRUE
+Sweden,records,records_facets,https://records.biodiversitydata.se/ws/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+Sweden,records,records_fields,https://records.biodiversitydata.se/ws/index/fields,show_all-fields,TRUE
+Sweden,records,records_occurrences,https://records.biodiversitydata.se/ws/occurrences/offline/download,atlas_occurrences,TRUE
+Sweden,records,records_query,https://records.biodiversitydata.se/ws/webportal/params,atlas_occurrences,TRUE
+Sweden,records,records_species,https://records.biodiversitydata.se/ws/occurrences/facets/download,atlas_species,TRUE
+Sweden,spatial,spatial_layers,https://sds.biodiversitydata.se/ws/layers,show_all-fields,TRUE
+Sweden,species,names_search_single,https://species.biodiversitydata.se/ws/search?q={name}&pageSize=5,search_taxa,TRUE
+Sweden,species,species_children,https://species.biodiversitydata.se/ws/childConcepts/,atlas_taxonomy,TRUE
+Sweden,species,species_lookup,https://species.biodiversitydata.se/ws/species,atlas_taxonomy,TRUE
+United Kingdom,collections,collections_collections,https://registry.nbnatlas.org/ws/collection,show_all-collections,TRUE
+United Kingdom,collections,collections_datasets,https://registry.nbnatlas.org/ws/dataResource,show_all-datasets,TRUE
+United Kingdom,collections,collections_providers,https://registry.nbnatlas.org/ws/dataProvider,show_all-providers,TRUE
+United Kingdom,images,image_licences,https://images.nbnatlas.org/licence,show_all-licences,TRUE
+United Kingdom,images,image_metadata,https://images.nbnatlas.org/image/,media_metadata,FALSE
+United Kingdom,lists,lists_all,https://lists.nbnatlas.org/ws/speciesList,show_all-lists,TRUE
+United Kingdom,lists,lists_lookup,https://lists.nbnatlas.org/ws/speciesListItems/{list_id},show_values-lists,TRUE
+United Kingdom,logger,logger_reasons,https://logger.nbnatlas.org/service/logger/reasons,show_all-reasons,TRUE
+United Kingdom,records,records_assertions,https://records-ws.nbnatlas.org/assertions/codes,show_all-assertions,TRUE
+United Kingdom,records,records_counts,https://records-ws.nbnatlas.org/occurrences/search,atlas_counts,TRUE
+United Kingdom,records,records_facets,https://records-ws.nbnatlas.org/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+United Kingdom,records,records_fields,https://records-ws.nbnatlas.org/index/fields,show_all-fields,TRUE
+United Kingdom,records,records_occurrences,https://records-ws.nbnatlas.org/occurrences/offline/download,atlas_occurrences,FALSE
+United Kingdom,records,records_query,https://records-ws.nbnatlas.org/webportal/params,atlas_occurrences,TRUE
+United Kingdom,records,records_species,https://records-ws.nbnatlas.org/occurrences/facets/download,atlas_species,TRUE
+United Kingdom,species,names_search_single,https://species-ws.nbnatlas.org/search?q={name}&pageSize=5,search_taxa,TRUE
+United Kingdom,species,species_children,https://species-ws.nbnatlas.org/childConcepts/,atlas_taxonomy,TRUE
+United Kingdom,species,species_lookup,https://species-ws.nbnatlas.org/species,atlas_taxonomy,TRUE

galah/node_config_full.csv

+atlas,system,api_name,api_url,called_by,functional
+Australia,collections,collections_collections,https://collections.ala.org.au/ws/collection,show_all-collections,TRUE
+Australia,collections,collections_datasets,https://collections.ala.org.au/ws/dataResource,show_all-datasets,TRUE
+Australia,collections,collections_providers,https://collections.ala.org.au/ws/dataProvider,show_all-providers,TRUE
+Australia,data-quality,profiles_all,https://data-quality-service.ala.org.au/api/v1/data-profiles,show_all-profiles,TRUE
+Australia,data-quality,profiles_lookup,https://data-quality-service.ala.org.au/api/v1/quality/activeProfile?profileName={profile},show_values-profiles,TRUE
+Australia,doi,doi_download,https://doi.ala.org.au/doi/{doi_string}/download,doi_download,TRUE
+Australia,images,image_licences,https://images.ala.org.au/ws/licence,show_all-licences,TRUE
+Australia,images,image_metadata,https://images.ala.org.au/ws/image/{id},media_metadata,TRUE
+Australia,lists,lists_all,https://lists.ala.org.au/ws/speciesList,show_all-lists,TRUE
+Australia,lists,lists_lookup,https://lists.ala.org.au/ws/speciesListItems/{list_id},show_values-lists,TRUE
+Australia,logger,logger_reasons,https://api.ala.org.au/logger/service/logger/reasons,show_all-reasons,TRUE
+Australia,name-matching,names_lookup,https://namematching-ws.ala.org.au/api/getByTaxonID,search_identifiers,TRUE
+Australia,name-matching,names_search_multiple,https://namematching-ws.ala.org.au/api/searchByClassification,search_taxa,TRUE
+Australia,name-matching,names_search_single,https://namematching-ws.ala.org.au/api/search?q={name},search_taxa,TRUE
+Australia,records,records_assertions,https://biocache-ws.ala.org.au/ws/assertions/codes,show_all-assertions,TRUE
+Australia,records,records_counts,https://biocache-ws.ala.org.au/ws/occurrences/search,atlas_counts,TRUE
+Australia,records,records_facets,https://biocache-ws.ala.org.au/ws/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+Australia,records,records_fields,https://biocache-ws.ala.org.au/ws/index/fields,show_all-fields,TRUE
+Australia,records,records_occurrences,https://biocache-ws.ala.org.au/ws/occurrences/offline/download,atlas_occurrences,TRUE
+Australia,records,records_query,https://biocache-ws.ala.org.au/ws/webportal/params,atlas_occurrences,TRUE
+Australia,records,records_species,https://biocache-ws.ala.org.au/ws/occurrences/facets/download,atlas_species,TRUE
+Australia,spatial,spatial_layers,https://spatial.ala.org.au/ws/layers,show_all-fields,TRUE
+Australia,species,species_children,https://bie-ws.ala.org.au/ws/childConcepts/{id},atlas_taxonomy,TRUE
+Australia,species,species_lookup,https://bie-ws.ala.org.au/ws/species/{id},atlas_taxonomy,TRUE
+Austria,collections,collections_collections,https://collectory.biodiversityatlas.at/ws/collection,show_all-collections,TRUE
+Austria,collections,collections_datasets,https://collectory.biodiversityatlas.at/ws/dataResource,show_all-datasets,TRUE
+Austria,collections,collections_providers,https://collectory.biodiversityatlas.at/ws/dataProvider,show_all-providers,TRUE
+Austria,images,image_licences,https://images.biodiversityatlas.at/ws/licence,show_all-licences,TRUE
+Austria,images,image_metadata,https://images.biodiversityatlas.at/ws/image/,media_metadata,FALSE
+Austria,lists,lists_all,https://lists.biodiversityatlas.at/ws/speciesList/,show_all-lists,TRUE
+Austria,lists,lists_lookup,https://lists.biodiversityatlas.at/ws/speciesListItems/{list_id},show_values-lists,TRUE
+Austria,logger,logger_reasons,https://logger.biodiversityatlas.at/service/logger/reasons,show_all-reasons,TRUE
+Austria,records,records_assertions,https://biocache-ws.biodiversityatlas.at/assertions/codes,show_all-assertions,TRUE
+Austria,records,records_counts,https://biocache-ws.biodiversityatlas.at/occurrences/search,atlas_counts,TRUE
+Austria,records,records_facets,https://biocache-ws.biodiversityatlas.at/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+Austria,records,records_fields,https://biocache-ws.biodiversityatlas.at/index/fields,show_all-fields,TRUE
+Austria,records,records_occurrences,https://biocache-ws.biodiversityatlas.at/occurrences/offline/download,atlas_occurrences,TRUE
+Austria,records,records_query,https://biocache-ws.biodiversityatlas.at/webportal/params,atlas_occurrences,TRUE
+Austria,records,records_species,https://biocache-ws.biodiversityatlas.at/occurrences/facets/download,atlas_species,TRUE
+Austria,spatial,spatial_layers,https://spatial.biodiversityatlas.at/ws/layers,show_all-fields,TRUE
+Austria,species,names_search_single,https://bie-ws.biodiversityatlas.at/search?q={name}&pageSize=5,search_taxa,TRUE
+Austria,species,species_children,https://bie-ws.biodiversityatlas.at/childConcepts/,atlas_taxonomy,TRUE
+Austria,species,species_lookup,https://bie-ws.biodiversityatlas.at/species,atlas_taxonomy,TRUE
+Brazil,collections,collections_collections,https://collectory.sibbr.gov.br/collectory/ws/collection,show_all-collections,TRUE
+Brazil,collections,collections_datasets,https://collectory.sibbr.gov.br/collectory/ws/dataResource,show_all-datasets,TRUE
+Brazil,collections,collections_providers,https://collectory.sibbr.gov.br/collectory/ws/dataProvider,show_all-providers,TRUE
+Brazil,images,image_licences,https://images.sibbr.gov.br/images/ws/licence,show_all-licences,TRUE
+Brazil,images,image_metadata,https://images.sibbr.gov.br/images/ws/image/,media_metadata,FALSE
+Brazil,lists,lists_all,https://specieslist.sibbr.gov.br/ws/speciesList/,show_all-lists,TRUE
+Brazil,lists,lists_lookup,https://specieslist.sibbr.gov.br/ws/speciesListItems/{list_id},show_values-lists,TRUE
+Brazil,records,records_assertions,https://biocache-service.sibbr.gov.br/biocache-service/assertions/codes,show_all-assertions,TRUE
+Brazil,records,records_counts,https://biocache-service.sibbr.gov.br/biocache-service/occurrences/search,atlas_counts,TRUE
+Brazil,records,records_facets,https://biocache-service.sibbr.gov.br/biocache-service/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+Brazil,records,records_fields,https://biocache-service.sibbr.gov.br/biocache-service/index/fields,show_all-fields,TRUE
+Brazil,records,records_occurrences,https://biocache-service.sibbr.gov.br/biocache-service/occurrences/offline/download,atlas_occurrences,TRUE
+Brazil,records,records_query,https://biocache-service.sibbr.gov.br/biocache-service/webportal/params,atlas_occurrences,TRUE
+Brazil,records,records_species,https://biocache-service.sibbr.gov.br/biocache-service/occurrences/facets/download,atlas_species,TRUE
+Brazil,spatial,spatial_layers,https://portal-espacial.sibbr.gov.br/spatial-hub/layers,show_all-fields,TRUE
+Brazil,species,names_search_single,https://bie-webservice.sibbr.gov.br/bie-index/search?q={name}&pageSize=5,search_taxa,TRUE
+Brazil,species,species_children,https://bie-webservice.sibbr.gov.br/bie-index/childConcepts/,atlas_taxonomy,TRUE
+Brazil,species,species_lookup,https://bie-webservice.sibbr.gov.br/bie-index/species,atlas_taxonomy,TRUE
+Canada,collections,collections_collections,http://collections.canadensys.net/ws/collection,show_all-collections,TRUE
+Canada,collections,collections_datasets,http://collections.canadensys.net/ws/dataResource,show_all-datasets,TRUE
+Canada,collections,collections_providers,http://collections.canadensys.net/ws/dataProvider,show_all-providers,TRUE
+Canada,logger,logger_reasons,http://logger.canadensys.net/service/logger/reasons,show_all-reasons,TRUE
+Canada,records,records_assertions,http://explorer-ws.canadensys.net/assertions/codes,show_all-assertions,TRUE
+Canada,records,records_counts,http://explorer-ws.canadensys.net/occurrences/search,atlas_counts,TRUE
+Canada,records,records_facets,http://explorer-ws.canadensys.net/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+Canada,records,records_fields,http://explorer-ws.canadensys.net/index/fields,show_all-fields,TRUE
+Canada,records,records_occurrences,http://explorer-ws.canadensys.net/occurrences/offline/download,atlas_occurrences,TRUE
+Canada,records,records_query,http://explorer-ws.canadensys.net/webportal/params,atlas_occurrences,TRUE
+Canada,records,records_species,http://explorer-ws.canadensys.net/occurrences/facets/download,atlas_species,TRUE
+Canada,species,names_search_single,https://api.gbif.org/v1/species/match?verbose=FALSE&name={name},search_taxa,TRUE
+Estonia,collections,collections_collections,https://elurikkus.ee/collectory/ws/collection,show_all-collections,TRUE
+Estonia,collections,collections_datasets,https://elurikkus.ee/collectory/ws/dataResource,show_all-datasets,TRUE
+Estonia,collections,collections_providers,https://elurikkus.ee/collectory/ws/dataProvider,show_all-providers,TRUE
+Estonia,records,records_assertions,https://elurikkus.ee/biocache-service/assertions/codes,show_all-assertions,TRUE
+Estonia,records,records_counts,https://elurikkus.ee/biocache-service/occurrences/search,atlas_counts,TRUE
+Estonia,records,records_facets,https://elurikkus.ee/biocache-service/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+Estonia,records,records_fields,https://elurikkus.ee/biocache-service/index/fields,show_all-fields,TRUE
+Estonia,records,records_query,https://elurikkus.ee/biocache-service/webportal/params,atlas_occurrences,TRUE
+Estonia,records,records_species,https://elurikkus.ee/biocache-service/occurrences/facets/download,atlas_species,TRUE
+Estonia,species,names_search_single,https://elurikkus.ee/bie-index/search?q={name}&pageSize=5,search_taxa,TRUE
+Estonia,species,species_children,https://elurikkus.ee/bie-index/childConcepts/,atlas_taxonomy,TRUE
+Estonia,species,species_lookup,https://elurikkus.ee/bie-index/species,atlas_taxonomy,TRUE
+France,collections,collections_collections,https://openobs.mnhn.fr/collectory/ws/collection,show_all-collections,TRUE
+France,collections,collections_datasets,https://openobs.mnhn.fr/collectory/ws/dataResource,show_all-datasets,TRUE
+France,collections,collections_providers,https://openobs.mnhn.fr/collectory/ws/dataProvider,show_all-providers,TRUE
+France,records,records_assertions,https://openobs.mnhn.fr/biocache-service/assertions/codes,show_all-assertions,TRUE
+France,records,records_counts,https://openobs.mnhn.fr/biocache-service/occurrences/search,atlas_counts,TRUE
+France,records,records_facets,https://openobs.mnhn.fr/biocache-service/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+France,records,records_fields,https://openobs.mnhn.fr/biocache-service/index/fields,show_all-fields,TRUE
+France,records,records_occurrences,https://openobs.mnhn.fr/biocache-service/occurrences/offline/download,atlas_occurrences,TRUE
+France,records,records_query,https://openobs.mnhn.fr/biocache-service/webportal/params,atlas_occurrences,TRUE
+France,records,records_species,https://openobs.mnhn.fr/biocache-service/occurrences/facets/download,atlas_species,TRUE
+France,name-matching,names_lookup,https://taxref.mnhn.fr/api/taxa/,search_identifiers,TRUE
+France,name-matching,names_search_single,https://taxref.mnhn.fr/api/taxa/search?scientificNames={name}&page=1&size=5,search_taxa,TRUE
+Global,species,names_search_single,https://api.gbif.org/v1/species/match?verbose=FALSE&name={name},search_taxa,TRUE
+Global,collections,collections_providers,https://api.gbif.org/v1/organization,show_all-providers,TRUE
+Global,collections,collections_collections,https://api.gbif.org/v1/grscicoll/collection,show_all-collections,TRUE
+Global,collections,collections_collections_search,https://api.gbif.org/v1/grscicoll/search,search_all-collections,TRUE
+Global,collections,collections_datasets,https://api.gbif.org/v1/dataset,show_all-datasets,TRUE
+Global,collections,collections_datasets_search,https://api.gbif.org/v1/dataset/search,search_all-datasets,TRUE
+Global,records,records_counts,https://api.gbif.org/v1/occurrence/search,"atlas_counts, show_values-fields",TRUE
+Global,records,records_occurrences,https://api.gbif.org/v1/occurrence/download/request,atlas_occurrences,TRUE
+Guatemala,collections,collections_collections,https://snib.conap.gob.gt/colecciones/ws/collection,show_all-collections,TRUE
+Guatemala,collections,collections_datasets,https://snib.conap.gob.gt/colecciones/ws/dataResource,show_all-datasets,TRUE
+Guatemala,collections,collections_providers,https://snib.conap.gob.gt/colecciones/ws/dataProvider,show_all-providers,TRUE
+Guatemala,images,image_licences,https://imagenes.snib.conap.gob.gt/licence,show_all-licences,TRUE
+Guatemala,images,image_metadata,https://imagenes.snib.conap.gob.gt/image/,media_metadata,FALSE
+Guatemala,logger,logger_reasons,https://snib.conap.gob.gt/logger/service/logger/reasons,show_all-reasons,TRUE
+Guatemala,records,records_assertions,https://snib.conap.gob.gt/registros-ws/assertions/codes,show_all-assertions,TRUE
+Guatemala,records,records_counts,https://snib.conap.gob.gt/registros-ws/occurrences/search,atlas_counts,TRUE
+Guatemala,records,records_facets,https://snib.conap.gob.gt/registros-ws/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+Guatemala,records,records_fields,https://snib.conap.gob.gt/registros-ws/index/fields,show_all-fields,TRUE
+Guatemala,records,records_occurrences,https://snib.conap.gob.gt/registros-ws/occurrences/offline/download,atlas_occurrences,TRUE
+Guatemala,records,records_query,https://snib.conap.gob.gt/registros-ws/webportal/params,atlas_occurrences,TRUE
+Guatemala,records,records_species,https://snib.conap.gob.gt/registros-ws/occurrences/facets/download,atlas_species,TRUE
+Guatemala,spatial,spatial_layers,https://geoespacial.snib.conap.gob.gt/ws/layers,show_all-fields,TRUE
+Guatemala,species,names_search_single,https://snib.conap.gob.gt/especies-ws/search?q={name}&pageSize=5,search_taxa,TRUE
+Guatemala,species,species_children,https://snib.conap.gob.gt/especies-ws/childConcepts/,atlas_taxonomy,TRUE
+Guatemala,species,species_lookup,https://snib.conap.gob.gt/especies-ws/species,atlas_taxonomy,TRUE
+Portugal,collections,collections_collections,https://metadados.gbif.pt/ws/collection,show_all-collections,TRUE
+Portugal,collections,collections_datasets,https://metadados.gbif.pt/ws/dataResource,show_all-datasets,TRUE
+Portugal,collections,collections_providers,https://metadados.gbif.pt/ws/dataProvider,show_all-providers,TRUE
+Portugal,images,image_licences,https://imagens.gbif.pt/ws/licence,show_all-licences,TRUE
+Portugal,images,image_metadata,https://imagens.gbif.pt/ws/image/,media_metadata,FALSE
+Portugal,logger,logger_reasons,https://logger.gbif.pt/service/logger/reasons,show_all-reasons,TRUE
+Portugal,records,records_assertions,https://registos-ws.gbif.pt/assertions/codes,show_all-assertions,TRUE
+Portugal,records,records_counts,https://registos-ws.gbif.pt/occurrences/search,atlas_counts,TRUE
+Portugal,records,records_facets,https://registos-ws.gbif.pt/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+Portugal,records,records_fields,https://registos-ws.gbif.pt/index/fields,show_all-fields,TRUE
+Portugal,records,records_query,https://registos-ws.gbif.pt/webportal/params,atlas_occurrences,TRUE
+Portugal,records,records_species,https://registos-ws.gbif.pt/occurrences/facets/download,atlas_species,TRUE
+Portugal,spatial,spatial_layers,https://espacial.gbif.pt/ws/layers,show_all-fields,TRUE
+Portugal,species,names_search_single,https://api.gbif.org/v1/species/match?verbose=FALSE&name={name},search_taxa,TRUE
+Spain,collections,collections_collections,https://colecciones.gbif.es/ws/collection,show_all-collections,TRUE
+Spain,collections,collections_datasets,https://colecciones.gbif.es/ws/dataResource,show_all-datasets,TRUE
+Spain,collections,collections_providers,https://colecciones.gbif.es/ws/dataProvider,show_all-providers,TRUE
+Spain,doi,doi_download,https://doi.gbif.es/doi/{doi_string}/download,doi_download,TRUE
+Spain,images,image_licences,https://imagenes.gbif.es/ws/licence,show_all-licences,TRUE
+Spain,images,image_metadata,https://imagenes.gbif.es/ws/image/,media_metadata,FALSE
+Spain,lists,lists_all,https://listas.gbif.es/ws/speciesList,show_all-lists,TRUE
+Spain,lists,lists_lookup,https://listas.gbif.es/ws/speciesListItems/{list_id},show_values-lists,TRUE
+Spain,data-quality,profiles_all,https://data-quality.gbif.es/api/v1/data-profiles,show_all-profiles,TRUE
+Spain,data-quality,profiles_lookup,https://data-quality.gbif.es/api/v1/quality/activeProfile?profileName={profile},show_values-profiles,TRUE
+Spain,logger,logger_reasons,https://logger.gbif.es/service/logger/reasons,show_all-reasons,TRUE
+Spain,name-matching,names_lookup,https://name-matching.gbif.es/api/getByTaxonID,search_identifiers,TRUE
+Spain,name-matching,names_search_multiple,https://name-matching.gbif.es/api/searchByClassification,search_taxa,TRUE
+Spain,name-matching,names_search_single,https://name-matching.gbif.es/api/search?q={name},search_taxa,TRUE
+Spain,records,records_assertions,https://registros-ws.gbif.es/assertions/codes,show_all-assertions,TRUE
+Spain,records,records_counts,https://registros-ws.gbif.es/occurrences/search,atlas_counts,TRUE
+Spain,records,records_facets,https://registros-ws.gbif.es/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+Spain,records,records_fields,https://registros-ws.gbif.es/index/fields,show_all-fields,TRUE
+Spain,records,records_occurrences,https://registros-ws.gbif.es/occurrences/offline/download,atlas_occurrences,TRUE
+Spain,records,records_query,https://registros-ws.gbif.es/webportal/params,atlas_occurrences,TRUE
+Spain,records,records_species,https://registros-ws.gbif.es/occurrences/facets/download,atlas_species,TRUE
+Spain,spatial,spatial_layers,https://espacial.gbif.es/ws/layers,show_all-fields,TRUE
+Spain,species,species_children,https://especies-ws.gbif.es/childConcepts/,atlas_taxonomy,TRUE
+Spain,species,species_lookup,https://especies-ws.gbif.es/species,atlas_taxonomy,TRUE
+Sweden,collections,collections_collections,https://collections.biodiversitydata.se/ws/collection,show_all-collections,TRUE
+Sweden,collections,collections_datasets,https://collections.biodiversitydata.se/ws/dataResource,show_all-datasets,TRUE
+Sweden,collections,collections_providers,https://collections.biodiversitydata.se/ws/dataProvider,show_all-providers,TRUE
+Sweden,images,image_licences,https://images.biodiversitydata.se/licence,show_all-licences,TRUE
+Sweden,images,image_metadata,https://images.biodiversitydata.se/image/,media_metadata,FALSE
+Sweden,logger,logger_reasons,https://logger.biodiversitydata.se/service/logger/reasons,show_all-reasons,TRUE
+Sweden,records,records_assertions,https://records.biodiversitydata.se/ws/assertions/codes,show_all-assertions,TRUE
+Sweden,records,records_counts,https://records.biodiversitydata.se/ws/occurrences/search,atlas_counts,TRUE
+Sweden,records,records_facets,https://records.biodiversitydata.se/ws/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+Sweden,records,records_fields,https://records.biodiversitydata.se/ws/index/fields,show_all-fields,TRUE
+Sweden,records,records_occurrences,https://records.biodiversitydata.se/ws/occurrences/offline/download,atlas_occurrences,TRUE
+Sweden,records,records_query,https://records.biodiversitydata.se/ws/webportal/params,atlas_occurrences,TRUE
+Sweden,records,records_species,https://records.biodiversitydata.se/ws/occurrences/facets/download,atlas_species,TRUE
+Sweden,spatial,spatial_layers,https://sds.biodiversitydata.se/ws/layers,show_all-fields,TRUE
+Sweden,species,names_search_single,https://species.biodiversitydata.se/ws/search?q={name}&pageSize=5,search_taxa,TRUE
+Sweden,species,species_children,https://species.biodiversitydata.se/ws/childConcepts/,atlas_taxonomy,TRUE
+Sweden,species,species_lookup,https://species.biodiversitydata.se/ws/species,atlas_taxonomy,TRUE
+United Kingdom,collections,collections_collections,https://registry.nbnatlas.org/ws/collection,show_all-collections,TRUE
+United Kingdom,collections,collections_datasets,https://registry.nbnatlas.org/ws/dataResource,show_all-datasets,TRUE
+United Kingdom,collections,collections_providers,https://registry.nbnatlas.org/ws/dataProvider,show_all-providers,TRUE
+United Kingdom,images,image_licences,https://images.nbnatlas.org/licence,show_all-licences,TRUE
+United Kingdom,images,image_metadata,https://images.nbnatlas.org/image/,media_metadata,FALSE
+United Kingdom,lists,lists_all,https://lists.nbnatlas.org/ws/speciesList,show_all-lists,TRUE
+United Kingdom,lists,lists_lookup,https://lists.nbnatlas.org/ws/speciesListItems/{list_id},show_values-lists,TRUE
+United Kingdom,logger,logger_reasons,https://logger.nbnatlas.org/service/logger/reasons,show_all-reasons,TRUE
+United Kingdom,records,records_assertions,https://records-ws.nbnatlas.org/assertions/codes,show_all-assertions,TRUE
+United Kingdom,records,records_counts,https://records-ws.nbnatlas.org/occurrences/search,atlas_counts,TRUE
+United Kingdom,records,records_facets,https://records-ws.nbnatlas.org/occurrence/facets,"atlas_counts, show_values-fields",TRUE
+United Kingdom,records,records_fields,https://records-ws.nbnatlas.org/index/fields,show_all-fields,TRUE
+United Kingdom,records,records_occurrences,https://records-ws.nbnatlas.org/occurrences/offline/download,atlas_occurrences,FALSE
+United Kingdom,records,records_query,https://records-ws.nbnatlas.org/webportal/params,atlas_occurrences,TRUE
+United Kingdom,records,records_species,https://records-ws.nbnatlas.org/occurrences/facets/download,atlas_species,TRUE
+United Kingdom,species,names_search_single,https://species-ws.nbnatlas.org/search?q={name}&pageSize=5,search_taxa,TRUE
+United Kingdom,species,species_children,https://species-ws.nbnatlas.org/childConcepts/,atlas_taxonomy,TRUE
+United Kingdom,species,species_lookup,https://species-ws.nbnatlas.org/species,atlas_taxonomy,TRUE

galah/node_config_old.csv

+atlas,system,api_name,api_url,called_by,functional,method
+Australia,collections,collections_collections,https://api.ala.org.au/common/collectory/collection,show_all-collections,TRUE,GET
+Australia,collections,collections_datasets,https://api.ala.org.au/common/collectory/dataResource,show_all-datasets,TRUE,GET
+Australia,collections,collections_providers,https://api.ala.org.au/common/collectory/dataProvider,show_all-providers,TRUE,GET
+Australia,data-quality,profiles_all,https://api.ala.org.au/common/data-quality/data-profiles,show_all-profiles,TRUE,GET
+Australia,data-quality,profiles_lookup,https://api.ala.org.au/common/data-quality/quality/activeProfile?profilename={profile},show_values-profiles,TRUE,GET
+Australia,doi,doi_download,https://api.ala.org.au/common/doi/{doi_string}/download,doi_download,TRUE,GET
+Australia,images,image_licences,https://api.ala.org.au/common/images/licence,show_all-licences,TRUE,GET
+Australia,images,image_metadata,https://api.ala.org.au/common/images/image/{id},media_metadata,TRUE,GET
+Australia,lists,lists_all,https://api.ala.org.au/common/lists/speciesList,show_all-lists,TRUE,GET
+Australia,lists,lists_lookup,https://api.ala.org.au/common/lists/speciesListItems/{list_id},show_values-lists,TRUE,GET
+Australia,logger,logger_reasons,https://api.ala.org.au/common/logger/reasons,show_all-reasons,TRUE,GET
+Australia,name-matching,names_lookup,https://api.ala.org.au/common/name-matching/getByTaxonID,search_identifiers,TRUE,GET
+Australia,name-matching,names_search_multiple,https://api.ala.org.au/common/name-matching/searchByClassification,search_taxa,TRUE,GET
+Australia,name-matching,names_search_single,https://api.ala.org.au/common/name-matching/search?q={name},search_taxa,TRUE,GET
+Australia,records,records_assertions,https://api.ala.org.au/common/biocache/assertions/codes,show_all-assertions,TRUE,GET
+Australia,records,records_counts,https://api.ala.org.au/common/biocache/occurrences/search,atlas_counts,TRUE,GET
+Australia,records,records_facets,https://api.ala.org.au/common/biocache/occurrences/facets,"atlas_counts, show_values-fields",TRUE,GET
+Australia,records,records_fields,https://api.ala.org.au/common/biocache/index/fields,show_all-fields,TRUE,GET
+Australia,records,records_occurrences,https://biocache-ws.ala.org.au/ws/occurrences/offline/download,atlas_occurrences,TRUE,GET
+Australia,records,records_query,https://api.ala.org.au,atlas_occurrences,FALSE,GET
+Australia,records,records_species,https://api.ala.org.au/occurrences/occurrences/facets/download,atlas_species,TRUE,GET
+Australia,spatial,spatial_layers,https://api.ala.org.au/common/spatial/layers,show_all-fields,TRUE,GET
+Australia,species,species_children,https://api.ala.org.au/common/bie/childConcepts/{id},atlas_taxonomy,TRUE,GET
+Australia,species,species_lookup,https://api.ala.org.au/common/bie/species/{id},atlas_taxonomy,TRUE,GET
+Australia,occurrences,occurrences_qid,https://biocache-ws.ala.org.au/ws/webportal/params,atlas_occurrences,TRUE,POST
+Austria,collections,collections_collections,https://collectory.biodiversityatlas.at/ws/collection,show_all-collections,TRUE,GET
+Austria,collections,collections_datasets,https://collectory.biodiversityatlas.at/ws/dataResource,show_all-datasets,TRUE,GET
+Austria,collections,collections_providers,https://collectory.biodiversityatlas.at/ws/dataProvider,show_all-providers,TRUE,GET
+Austria,images,image_licences,https://images.biodiversityatlas.at/ws/licence,show_all-licences,TRUE,GET
+Austria,images,image_metadata,https://images.biodiversityatlas.at/ws/image/,media_metadata,FALSE,GET
+Austria,lists,lists_all,https://lists.biodiversityatlas.at/ws/speciesList/,show_all-lists,TRUE,GET
+Austria,lists,lists_lookup,https://lists.biodiversityatlas.at/ws/speciesListItems/{list_id},show_values-lists,TRUE,GET
+Austria,logger,logger_reasons,https://logger.biodiversityatlas.at/service/logger/reasons,show_all-reasons,TRUE,GET
+Austria,records,records_assertions,https://biocache-ws.biodiversityatlas.at/assertions/codes,show_all-assertions,TRUE,GET
+Austria,records,records_counts,https://biocache-ws.biodiversityatlas.at/occurrences/search,atlas_counts,TRUE,GET
+Austria,records,records_facets,https://biocache-ws.biodiversityatlas.at/occurrence/facets,"atlas_counts, show_values-fields",TRUE,GET
+Austria,records,records_fields,https://biocache-ws.biodiversityatlas.at/index/fields,show_all-fields,TRUE,GET
+Austria,records,records_occurrences,https://biocache-ws.biodiversityatlas.at/occurrences/offline/download,atlas_occurrences,TRUE,GET
+Austria,records,records_query,https://biocache-ws.biodiversityatlas.at/webportal/params,atlas_occurrences,TRUE,GET
+Austria,records,records_species,https://biocache-ws.biodiversityatlas.at/occurrences/facets/download,atlas_species,TRUE,GET
+Austria,spatial,spatial_layers,https://spatial.biodiversityatlas.at/ws/layers,show_all-fields,TRUE,GET
+Austria,species,names_search_single,https://bie-ws.biodiversityatlas.at/search?q={name}&pageSize=5,search_taxa,TRUE,GET
+Austria,species,species_children,https://bie-ws.biodiversityatlas.at/childConcepts/,atlas_taxonomy,TRUE,GET
+Austria,species,species_lookup,https://bie-ws.biodiversityatlas.at/species,atlas_taxonomy,TRUE,GET
+Brazil,collections,collections_collections,https://collectory.sibbr.gov.br/collectory/ws/collection,show_all-collections,TRUE,GET
+Brazil,collections,collections_datasets,https://collectory.sibbr.gov.br/collectory/ws/dataResource,show_all-datasets,TRUE,GET
+Brazil,collections,collections_providers,https://collectory.sibbr.gov.br/collectory/ws/dataProvider,show_all-providers,TRUE,GET
+Brazil,images,image_licences,https://images.sibbr.gov.br/images/ws/licence,show_all-licences,TRUE,GET
+Brazil,images,image_metadata,https://images.sibbr.gov.br/images/ws/image/,media_metadata,FALSE,GET
+Brazil,lists,lists_all,https://specieslist.sibbr.gov.br/ws/speciesList/,show_all-lists,TRUE,GET
+Brazil,lists,lists_lookup,https://specieslist.sibbr.gov.br/ws/speciesListItems/{list_id},show_values-lists,TRUE,GET
+Brazil,records,records_assertions,https://biocache-service.sibbr.gov.br/biocache-service/assertions/codes,show_all-assertions,TRUE,GET
+Brazil,records,records_counts,https://biocache-service.sibbr.gov.br/biocache-service/occurrences/search,atlas_counts,TRUE,GET
+Brazil,records,records_facets,https://biocache-service.sibbr.gov.br/biocache-service/occurrence/facets,"atlas_counts, show_values-fields",TRUE,GET
+Brazil,records,records_fields,https://biocache-service.sibbr.gov.br/biocache-service/index/fields,show_all-fields,TRUE,GET
+Brazil,records,records_occurrences,https://biocache-service.sibbr.gov.br/biocache-service/occurrences/offline/download,atlas_occurrences,TRUE,GET
+Brazil,records,records_query,https://biocache-service.sibbr.gov.br/biocache-service/webportal/params,atlas_occurrences,TRUE,GET
+Brazil,records,records_species,https://biocache-service.sibbr.gov.br/biocache-service/occurrences/facets/download,atlas_species,TRUE,GET
+Brazil,spatial,spatial_layers,https://portal-espacial.sibbr.gov.br/spatial-hub/layers,show_all-fields,TRUE,GET
+Brazil,species,names_search_single,https://bie-webservice.sibbr.gov.br/bie-index/search?q={name}&pageSize=5,search_taxa,TRUE,GET
+Brazil,species,species_children,https://bie-webservice.sibbr.gov.br/bie-index/childConcepts/,atlas_taxonomy,TRUE,GET
+Brazil,species,species_lookup,https://bie-webservice.sibbr.gov.br/bie-index/species,atlas_taxonomy,TRUE,GET
+France,collections,collections_collections,https://openobs.mnhn.fr/collectory/ws/collection,show_all-collections,TRUE,GET
+France,collections,collections_datasets,https://openobs.mnhn.fr/collectory/ws/dataResource,show_all-datasets,TRUE,GET
+France,collections,collections_providers,https://openobs.mnhn.fr/collectory/ws/dataProvider,show_all-providers,TRUE,GET
+France,records,records_assertions,https://openobs.mnhn.fr/biocache-service/assertions/codes,show_all-assertions,TRUE,GET
+France,records,records_counts,https://openobs.mnhn.fr/biocache-service/occurrences/search,atlas_counts,TRUE,GET
+France,records,records_facets,https://openobs.mnhn.fr/biocache-service/occurrence/facets,"atlas_counts, show_values-fields",TRUE,GET
+France,records,records_fields,https://openobs.mnhn.fr/biocache-service/index/fields,show_all-fields,TRUE,GET
+France,records,records_occurrences,https://openobs.mnhn.fr/biocache-service/occurrences/offline/download,atlas_occurrences,TRUE,GET
+France,records,records_query,https://openobs.mnhn.fr/biocache-service/webportal/params,atlas_occurrences,TRUE,GET
+France,records,records_species,https://openobs.mnhn.fr/biocache-service/occurrences/facets/download,atlas_species,TRUE,GET
+France,name-matching,names_lookup,https://taxref.mnhn.fr/api/taxa/,search_identifiers,TRUE,GET
+France,name-matching,names_search_single,https://taxref.mnhn.fr/api/taxa/search?scientificNames={name}&page=1&size=5,search_taxa,TRUE,GET
+Global,species,names_search_single,https://api.gbif.org/v1/species/match?verbose=FALSE&name={name},search_taxa,TRUE,GET
+Global,collections,collections_providers,https://api.gbif.org/v1/organization,show_all-providers,TRUE,GET
+Global,collections,collections_collections,https://api.gbif.org/v1/grscicoll/collection,show_all-collections,TRUE,GET
+Global,collections,collections_collections_search,https://api.gbif.org/v1/grscicoll/search,search_all-collections,TRUE,GET
+Global,collections,collections_datasets,https://api.gbif.org/v1/dataset,show_all-datasets,TRUE,GET
+Global,collections,collections_datasets_search,https://api.gbif.org/v1/dataset/search,search_all-datasets,TRUE,GET
+Global,records,records_counts,https://api.gbif.org/v1/occurrence/search,"atlas_counts, show_values-fields",TRUE,GET
+Global,records,records_occurrences,https://api.gbif.org/v1/occurrence/download/request,atlas_occurrences,TRUE,POST
+Spain,collections,collections_collections,https://colecciones.gbif.es/ws/collection,show_all-collections,TRUE,GET
+Spain,collections,collections_datasets,https://colecciones.gbif.es/ws/dataResource,show_all-datasets,TRUE,GET
+Spain,collections,collections_providers,https://colecciones.gbif.es/ws/dataProvider,show_all-providers,TRUE,GET
+Spain,doi,doi_download,https://doi.gbif.es/doi/{doi_string}/download,doi_download,TRUE,GET
+Spain,images,image_licences,https://imagenes.gbif.es/ws/licence,show_all-licences,TRUE,GET
+Spain,images,image_metadata,https://imagenes.gbif.es/ws/image/,media_metadata,FALSE,GET
+Spain,lists,lists_all,https://listas.gbif.es/ws/speciesList,show_all-lists,TRUE,GET
+Spain,lists,lists_lookup,https://listas.gbif.es/ws/speciesListItems/{list_id},show_values-lists,TRUE,GET
+Spain,data-quality,profiles_all,https://data-quality.gbif.es/api/v1/data-profiles,show_all-profiles,TRUE,GET
+Spain,data-quality,profiles_lookup,https://data-quality.gbif.es/api/v1/quality/activeProfile?profileName={profile},show_values-profiles,TRUE,GET
+Spain,logger,logger_reasons,https://logger.gbif.es/service/logger/reasons,show_all-reasons,TRUE,GET
+Spain,name-matching,names_lookup,https://name-matching.gbif.es/api/getByTaxonID,search_identifiers,TRUE,GET
+Spain,name-matching,names_search_multiple,https://name-matching.gbif.es/api/searchByClassification,search_taxa,TRUE,GET
+Spain,name-matching,names_search_single,https://name-matching.gbif.es/api/search?q={name},search_taxa,TRUE,GET
+Spain,records,records_assertions,https://registros-ws.gbif.es/assertions/codes,show_all-assertions,TRUE,GET
+Spain,records,records_counts,https://registros-ws.gbif.es/occurrences/search,atlas_counts,TRUE,GET
+Spain,records,records_facets,https://registros-ws.gbif.es/occurrence/facets,"atlas_counts, show_values-fields",TRUE,GET
+Spain,records,records_fields,https://registros-ws.gbif.es/index/fields,show_all-fields,TRUE,GET
+Spain,records,records_occurrences,https://registros-ws.gbif.es/occurrences/offline/download,atlas_occurrences,TRUE,GET
+Spain,records,records_query,https://registros-ws.gbif.es/webportal/params,atlas_occurrences,TRUE,GET
+Spain,records,records_species,https://registros-ws.gbif.es/occurrences/facets/download,atlas_species,TRUE,GET
+Spain,spatial,spatial_layers,https://espacial.gbif.es/ws/layers,show_all-fields,TRUE,GET
+Spain,species,species_children,https://especies-ws.gbif.es/childConcepts/,atlas_taxonomy,TRUE,GET
+Spain,species,species_lookup,https://especies-ws.gbif.es/species,atlas_taxonomy,TRUE,GET

galah/version.py

+#-------------------------------------------------------
+# version
+#-------------------------------------------------------
+__version__ = "0.9.0"

galah/__init__.py

@@ -36,3 +36,3 @@ # -------------------------------------------------------
 #-------------------------------------------------------
-__version__ = "0.8.3"
+from .version import __version__
 
@@ -39,0 +39,0 @@ # get all functions to display

galah/atlas_counts.py

@@ -10,3 +10,6 @@ import requests
 from .common_dictionaries import COUNTS_NAMES
+from .version import __version__
 
+import json
+
 def atlas_counts(taxa=None,
@@ -89,12 +92,12 @@ scientific_name=None,
     if use_data_profile and atlas not in ["Australia","ALA"]:
-                raise ValueError("True and False are the only values accepted for data_profile, and the only atlas using a data \n"
-                                "quality profile is Australia.  Your atlas and data profile is \n"
-                                "set in your config file.  To set your default filter, find out what profiles are on offer:\n"
-                                "profiles = galah.show_all(profiles=True)\n\n"
-                                "and then type\n\n"
-                                "profiles['shortName']\n\n"
-                                "to get the names of the data quality profiles you can use.  To set a data profile, type\n" 
-                                "galah.galah_config(data_profile=\"NAME FROM SHORTNAME HERE\")"
-                                "If you don't want to use a data quality profile, set it to None by typing the following:\n\n"
-                                "galah.galah_config(data_profile=\"None\")")
+        raise ValueError("True and False are the only values accepted for data_profile, and the only atlas using a data \n"
+                        "quality profile is Australia.  Your atlas and data profile is \n"
+                        "set in your config file.  To set your default filter, find out what profiles are on offer:\n"
+                        "profiles = galah.show_all(profiles=True)\n\n"
+                        "and then type\n\n"
+                        "profiles['shortName']\n\n"
+                        "to get the names of the data quality profiles you can use.  To set a data profile, type\n" 
+                        "galah.galah_config(data_profile=\"NAME FROM SHORTNAME HERE\")"
+                        "If you don't want to use a data quality profile, set it to None by typing the following:\n\n"
+                        "galah.galah_config(data_profile=\"None\")")
     
@@ -113,11 +116,5 @@ # check for Brazilian atlas
 
-    # create headers
-    headers = {}
+    # get headers
+    headers = {"User-Agent": "galah-python/{}".format(__version__)}
 
-    #future code for API keys
-    #if atlas in ["Australia","ALA"]:
-    #    headers = {"x-api-key": configs["galahSettings"]["ALA_API_key"]}
-    #else:
-    #    headers = {}
-
     # create payload (for ALA)
@@ -163,3 +160,3 @@ payload = {}
         # cache the user's query and get a query ID
-        qid = requests.request(method2,qid_URL,data=payload)
+        qid = requests.request(method2,qid_URL,data=payload,headers=headers)
         
@@ -171,2 +168,4 @@ # create the URL to grab your queryID and counts
             print()
+            print("headers: {}".format(headers))
+            print()
             print("payload for queryID: {}".format(payload))
@@ -183,3 +182,3 @@ print("queryID URL: {}".format(qid_URL))
         response = requests.request(method,URL,headers=headers)
-        
+
         # check for daily maximum
@@ -200,3 +199,3 @@ if response.status_code == 429:
 
-            URL += generate_list_taxonConceptIDs(taxa=taxa,atlas=atlas)
+            URL += generate_list_taxonConceptIDs(taxa=taxa,atlas=atlas,verbose=verbose)
 
@@ -252,2 +251,3 @@ # check if user wants to gropu counts
             print()
+            print("headers: {}".format(headers))
             print("URL for querying: {}".format(URL))
@@ -254,0 +254,0 @@ print("Method: {}".format(method))

galah/atlas_media.py

 import requests,os
 import pandas as pd
 import json
-import urllib.request
 
@@ -12,2 +11,3 @@ from .atlas_occurrences import atlas_occurrences
 from .show_all import show_all
+from .version import __version__
 
@@ -99,4 +99,4 @@ # this function parses everything to atlas_occurrences first, and it adds something to the galah_filter argument to say
 
-    # get headers for some APIs
-    headers = {}
+    # get headers
+    headers = {"User-Agent": "galah-python/{}".format(__version__)}
 
@@ -115,7 +115,2 @@ # check for fields
 
-    #if atlas in ["Australia","ALA"]:
-    #    headers = {"x-api-key": configs["galahSettings"]["ALA_API_key"]}
-    #else:
-    #    headers = {}
-
     # create the output data frame
@@ -249,3 +244,3 @@ if atlas == "Australia":
             new_filtered_media_array = pd.concat([filtered_media_array.head(top_index),pd.DataFrame(duplicate_dict)]).reset_index(drop=True)
-            response = requests.request(method,basemediaURL,data=json.dumps({"imageIds": new_filtered_media_array[media].to_list()}))
+            response = requests.request(method,basemediaURL,data=json.dumps({"imageIds": new_filtered_media_array[media].to_list()}),headers=headers)
             
@@ -302,3 +297,3 @@ # get metadata here
                     #    ext = "jpg"
-                    data = requests.get("{}.{}".format(image["imageUrl"],ext)).content
+                    data = requests.get("{}.{}".format(image["imageUrl"],ext),headers=headers).content
                     f = open("{}/image-{}.{}".format(path,image["images"],ext),'wb')
@@ -305,0 +300,0 @@ f.write(data)

galah/atlas_occurrences.py

@@ -21,2 +21,3 @@ import sys
 from .show_all import show_all
+from .version import __version__
 
@@ -119,15 +120,21 @@ def atlas_occurrences(taxa=None,
     # check for email
-    if configs["galahSettings"]["email"] is None or configs["galahSettings"]["email"] is "[e-mail]":
+    if configs["galahSettings"]["email"] is None or configs["galahSettings"]["email"] == "[e-mail]":
         raise ValueError("Please provide an email for querying")
 
-    headers = {}
+    # initialise headers
+    if atlas in ["GBIF","Global"]:
+        headers = {
+            "User-Agent": "galah-python/{}".format(__version__),
+            "X-USER-AGENT": "galah-python/{}".format(__version__),
+            "Content-type": "application/json",
+            "Accept": "application/json",
+        }
+    else:
+        # get headers
+        headers = {"User-Agent": "galah-python {}".format(__version__)}
 
+
+    # initialise payload
     payload = {}
 
-    # add API key for ALA
-    #if atlas in ["Australia","ALA"]:
-    #    headers = {"x-api-key": configs["galahSettings"]["ALA_API_key"]}
-    #else:
-    #    headers = {}
-
     # create authentication key
@@ -169,3 +176,3 @@ if atlas in ["Global","GBIF"]:
         # check for these atlases first
-        if atlas in ["Australia","Austria","Brazil","France","Spain"]:
+        if atlas in ["Australia","Austria","Brazil","France","Guatemala","Spain","Sweden"]: # added Guatemala
             baseURL, method = get_api_url(column1='called_by', column1value='atlas_occurrences',column2='api_name', 
@@ -179,15 +186,2 @@ column2value='records_occurrences',add_email=True)
 
-    # Ensure headers are taken care of
-    #if atlas in ["Australia","ALA"]:
-    #    headers = {"x-api-key": configs["galahSettings"]["ALA_API_key"]}
-    if atlas in ["GBIF","Global"]:
-        headers = {
-            "User-Agent": "galah-python v0.5.0", #.format(VERSION HERE)
-            "X-USER-AGENT": "galah-python v0.5.0",
-            "Content-type": "application/json",
-            "Accept": "application/json",
-        }
-    else:
-        headers = {}
-
     # goes to the 'fields' argument in occurrence download (csv list, commas between)
@@ -198,7 +192,9 @@ if atlas in ["Australia","ALA"]:
         if fields != "basic":
-            baseURL += galah_select(select=fields,atlas=atlas)[:-3] + "&"
+            baseURL += galah_select(select=fields,atlas=atlas) + "&"
         else:
-            baseURL += galah_select(select=ATLAS_SELECTIONS[atlas],atlas=atlas)[:-3] + "&"
-    elif atlas in ["Austria","Brazil","France","Spain"]:
-        baseURL += galah_select(select=ATLAS_SELECTIONS[atlas],atlas=atlas)[:-3] + "&"
+            baseURL += galah_select(select=ATLAS_SELECTIONS[atlas],atlas=atlas) + "&"
+    elif fields is None and atlas in ["Sweden"]:
+        baseURL += galah_select(select=ATLAS_SELECTIONS[atlas],atlas=atlas) + "&"
+    elif atlas in ["Austria","Brazil","France","Spain","Guatemala"]:
+        baseURL += galah_select(select=ATLAS_SELECTIONS[atlas],atlas=atlas) + "&"
     elif fields is not None and atlas in ["Global","GBIF"]:
@@ -231,3 +227,3 @@ print("GBIF, unfortunately, does not support choosing your desired data fields before download.  You will have to download them and then get categories you want.")
         qid_URL, method2 = get_api_url(column1="api_name",column1value="occurrences_qid")
-        qid = requests.request(method2,qid_URL,data=payload)
+        qid = requests.request(method2,qid_URL,data=payload,headers=headers)
         
@@ -250,2 +246,3 @@ # create the URL to grab your queryID and counts
             print()
+            print("headers: {}".format(headers))
             print("payload for queryID: {}".format(payload))
@@ -363,2 +360,3 @@ print("queryID URL: {}".format(qid_URL))
                 print("URL for querying:\n\n{}\n".format(URL))
+                print("headers: {}\n".format(headers))
                 print("payload: \n\n{}\n".format(payload))
@@ -396,7 +394,2 @@
     
-    # # if we get an error, raise one
-    # if atlas not in ["GBIF","Global"]:
-    #     if response.status_code == 403:
-    #         raise ValueError(response.json()["error"])
-
     # this may take a while - occasionally check if status has changed
@@ -403,0 +396,0 @@ if atlas in ["Global","GBIF"]:

galah/atlas_species.py

@@ -10,3 +10,6 @@ import requests,urllib.parse,io
 from .show_all import show_all
+from .version import __version__
 
+import json
+
 def atlas_species(taxa=None,
@@ -68,4 +71,4 @@ scientific_name=None,
 
-    # specify headers for API call
-    headers = {}
+    # get headers
+    headers = {"User-Agent": "galah-python/{}".format(__version__)}
 
@@ -75,7 +78,2 @@ # create payload variable so it is available for some atlases
 
-    #if atlas in ["Australia","ALA"]:
-    #    headers = {"x-api-key": configs["galahSettings"]["ALA_API_key"]}
-    #else:
-    #    headers = {}
-
     # first, check if the user has specified a taxa and if it is of the right variable type
@@ -112,3 +110,3 @@ if type(taxa) is not str and type(taxa) is not list and taxa is not None:
         qid_URL, method2 = get_api_url(column1="api_name",column1value="occurrences_qid")
-        qid = requests.request(method2,qid_URL,data=payload)
+        qid = requests.request(method2,qid_URL,data=payload,headers=headers)
         
@@ -129,2 +127,4 @@ # create the URL to grab the species ID and lists
             print()
+            print("headers: {}".format(headers))
+            print()
             print("payload for queryID: {}".format(payload))
@@ -131,0 +131,0 @@ print("queryID URL: {}".format(qid_URL))

galah/common_dictionaries.py

 # all available atlases
-atlases = ["Australia","Austria","Brazil","France","Global","GBIF","Spain","Sweden"]
+atlases = ["Australia","Austria","Brazil","France","Global","GBIF","Guatemala","Spain","Sweden"] #,"United Kingdom"]
 
@@ -34,3 +34,3 @@ # common names for each atlas
     "Spain": "taxonConceptID",
-    "Sweden": "id", # was guid
+    "Sweden": "taxonConceptID", # was guid
     "United Kingdom": "guid",
@@ -58,3 +58,5 @@ }
     "Global": {"finished_status": "SUCCEEDED","zipURL_arg": "downloadLink","separator": "\t"},
-    "Spain": {"finished_status": "finished","zipURL_arg": "downloadUrl","separator": ","}
+    "Guatemala": {"finished_status": "finished","zipURL_arg": "downloadUrl","separator": ","},
+    "Spain": {"finished_status": "finished","zipURL_arg": "downloadUrl","separator": ","},
+    "Sweden": {"finished_status": "finished","zipURL_arg": "downloadUrl","separator": ","}
 }
@@ -78,3 +80,3 @@
                   "species": "speciesID", "subspecies": "subspeciesID"},
-    "GBIF": {"kingdom": "KIMGDOM_KEY", "phylum": "PHYLUM_KEY", "class": "CLASS_KEY", 
+    "GBIF": {"kingdom": "KINGDOM_KEY", "phylum": "PHYLUM_KEY", "class": "CLASS_KEY", 
                   "order": "ORDER_KEY", "family": "FAMILY_KEY","genus": "GENUS_KEY", 
@@ -85,3 +87,5 @@ "species": "SPECIES_KEY", "subspecies": "SUBSPECIES_KEY"},
                   "species": "SPECIES_KEY"}, #, "subspecies": "SUBSPECIES_KEY"},
-    "Guatemala": {},
+    "Guatemala": {"kingdom": "kingdom_guid", "phylum": "phylum_guid","class": "class_guid", 
+                  "order": "order_guid", "family": "family_guid","genus": "genus_guid", 
+                  "species": "species_guid", "subspecies": "subspecies_guid"},
     "Portugal": {},
@@ -92,4 +96,4 @@ "Spain": {"kingdom": "kingdomID", "phylum": "phylumID",
     "Sweden": {"kingdom": "kingdom_id", "phylum": "phylum_id","class": "class_id", 
-               "order": "order_id", "family": "family_id","genus": "genus_id", 
-               "species": "species_id", "subspecies": "subspecies_id"},
+               "order": "order_id", "family": "family_id","genus": "genus", 
+               "species": "species", "subspecies": "subspecies"},
     "United Kingdom": {}
@@ -111,7 +115,8 @@ }
     "GBIF": ["decimalLatitude", "decimalLongitude", "eventDate", "scientificName", "taxonConceptID", "recordID", "dataResourceName", "occurrenceStatus"],
-    "Guatemala": [],
+    "Guatemala": ["latitude","longitude","occurrence_date","taxon_name","common_name",
+                "taxon_concept_lsid","occurrence_id","data_resource_uid","occurrence_status"],
     "Portugal": [],
     "Spain": ["latitude","longitude","occurrence_date","taxon_name","common_name",
                 "taxon_concept_lsid","occurrence_id","data_resource_uid","occurrence_status"],
-    "Sweden": [],
+    "Sweden": "basic",
     "United Kingdom": [],
@@ -182,3 +187,5 @@ }
     "Guatemala": ['searchResults','results'],
-    "Sweden": ['searchResults','results']
+    "Sweden": ['searchResults','results'],
+    "United Kingdom": ['searchResults','results'],
+    "UK": ['searchResults','results']
 }
@@ -208,5 +215,6 @@
                   'phylum', 'class', 'order', 'family', 'genus', 'species', 'issues', 'vernacularName'],
-    "Sweden": ['scientificName', 'scientificNameAuthorship', 'guid','rank','match_type','kingdom', 
+    "Sweden": ['scientificName', 'scientificNameAuthorship', 'taxonConceptID','rank','match_type','kingdom', 
                   'phylum', 'class', 'order', 'family', 'genus', 'species', 'issues', 'commonName'],
-    "United Kingdom": "",
+    "United Kingdom": ['scientificName', 'scientificNameAuthorship', 'guid','rank','match_type','kingdom', 
+                  'phylum', 'class', 'order', 'family', 'genus', 'species', 'issues', 'commonName']
 }
@@ -213,0 +221,0 @@

galah/common_functions.py

@@ -11,2 +11,3 @@ import requests
 from shapely import Polygon,MultiPolygon
+from .version import __version__
 
@@ -46,2 +47,3 @@ def add_predicates(predicates=None,
         else:
+            ### TODO: check that this is correct
             for f in filters:
@@ -61,6 +63,6 @@ URL += "&{}".format(galah_filter(f,ifgroupBy=ifGroupBy))
         for f in filters:
-            URL += galah_filter(f,ifgroupBy=ifGroupBy) + "AND" 
-                    
+            URL += galah_filter(f,ifgroupBy=ifGroupBy) + "%20AND%20"
+        
         # remove last AND and add a closing parenthesis
-        URL = URL[:-len("AND")] + "%29"
+        URL = URL[:-len("%20AND%20")] + "%29"
         
@@ -76,2 +78,3 @@ return URL
     if expand:
+
         if len(entry['fq'].split(':')) > 2:
@@ -83,7 +86,12 @@ name_and_values = entry['fq'].split(':')
             name,value=entry['fq'].split(':')
+
         value = value.replace('"', '')
         if value.isdigit():
             value = int(value)
-        dict_values[name].append(value)
-        dict_values['count'].append(int(entry['count']))
+        
+        # check that this is correct
+        if name in dict_values:
+            dict_values[name].append(value)
+            dict_values['count'].append(int(entry['count']))
+
         for key in dict_values:
@@ -104,4 +112,6 @@ if (key != name) and (key != 'count'):
             value = int(value)
-        dict_values[name].append(value)
-        dict_values['count'].append(int(entry['count']))
+        # check that this is correct
+        if name in dict_values:
+            dict_values[name].append(value)
+            dict_values['count'].append(int(entry['count']))
         for entry in dict_values:
@@ -122,2 +132,4 @@ if (entry != name) and (entry != 'count'):
     '''Function for getting responses for all of the show_all functions'''
+    # get headers
+    headers = {"User-Agent": "galah-python {}".format(__version__)}
 
@@ -139,3 +151,4 @@ # get data and check for
                                   scientific_name=None,
-                                  atlas=None):
+                                  atlas=None,
+                                  verbose=None):
     '''Function for getting more than one taxonConceptIDs'''
@@ -176,4 +189,4 @@
             raise TypeError("The taxa argument can only be a string or a list."
-                        "\nExample: atlas.counts(\"Vulpes vulpes\")"
-                        "\n         atlas.counts[\"Osphranter rufus\",\"Vulpes vulpes\",\"Macropus giganteus\",\"Phascolarctos cinereus\"])")
+                        "\nExample: galah.atlas_counts(\"Vulpes vulpes\")"
+                        "\n         galah.atlas_counts[\"Osphranter rufus\",\"Vulpes vulpes\",\"Macropus giganteus\",\"Phascolarctos cinereus\"])")
 
@@ -184,3 +197,3 @@ # get the number of records associated with each taxa
             # create temporary dataframe for taxon id
-            tempdf = search_taxa(name)
+            tempdf = search_taxa(taxa=name,verbose=verbose)
             
@@ -187,0 +200,0 @@ # check if dataframe is empty - if so, return None; else, continue

galah/config.ini

 [galahSettings]
-email=[e-mail]
-email_notify=False
-atlas=Australia
-data_profile=None
-ranks=all
-reason=4
-# remove defaults when releasing
-#usernameGBIF= 
-#passwordGBIF= 
-# ALA data - DO NOT COMMIT ANYWHERE
-# for galah
-# for [e-mail]
-#ALA_API_key=
-# for jwt generation
+email = 
+email_notify = False
+atlas = Australia
+data_profile = None
+ranks = all
+reason = 4
+usernamegbif = 
+passwordgbif = 
+

galah/galah_filter.py

@@ -150,2 +150,3 @@ import re,urllib
             elif specialChar == '!=' or specialChar == '=!':
+                print("here")
                 return "-{}:{}".format(parts[0], parts[1])
@@ -152,0 +153,0 @@

galah/galah_group_by.py

@@ -9,2 +9,3 @@ import requests
 from .common_functions import get_api_url,put_entries_in_grouped_dict,add_to_payload_ALA
+from .version import __version__
 
@@ -34,10 +35,4 @@ def galah_group_by(URL=None,
     # get headers
-    headers = {}
-    #if atlas in ["Australia","ALA"]:
-    #    headers = {"x-api-key": configs["galahSettings"]["ALA_API_key"]}
-    #else:
-    #    headers = {}
-
-    # if atlas in ["Australia","ALA"]:
-
+    headers = {"User-Agent": "galah-python {}".format(__version__)}
+    
     # check to see if the expand option is true
@@ -93,3 +88,3 @@ if expand:
             qid_URL, method2 = get_api_url(column1="api_name",column1value="occurrences_qid")
-            qid = requests.request(method2,qid_URL,data=payload)
+            qid = requests.request(method2,qid_URL,data=payload,headers=headers)
             facets = "".join("&facets={}".format(g) for g in group_by)
@@ -104,2 +99,4 @@ if startingURL[-1] == "&":
                 print()
+                print("headers: {}".format(headers))
+                print()
                 print("payload for queryID: {}".format(payload))
@@ -135,2 +132,4 @@ print("queryID URL: {}".format(qid_URL))
                 print()
+                print("headers: {}".format(headers))
+                print()
                 print("URL for querying: {}".format(startingURL))
@@ -160,2 +159,7 @@ print("Method: {}".format(method))
             facet_name = 'fq'
+        # elif atlas in ["Guatemala"]:
+        #     print(len(response_json))
+        #     print(response_json)
+        #     import sys
+        #     sys.exit()
         else:
@@ -175,3 +179,12 @@ length = len(response_json['facetResults'])
             # was 1,len(group_by)
-            for i in range(0,len(group_by)-1):
+            ### TRY THIS
+            if atlas not in ["Global","GBIF"]:
+                start = 0
+                end = len(group_by) - 1
+            else:
+                start = 1
+                end = len(group_by)
+            
+            # now do loop
+            for i in range(start,end):
                 temp_array=[]
@@ -186,3 +199,3 @@ for entry in results_array[i][field_name]:
             # was combined_facets_array
-            for i,f in enumerate(combined_facets_array):
+            for f in combined_facets_array:
 
@@ -192,31 +205,37 @@ # check for GBIF atlas
 
-                    # loop over all specified facets
+                    inc = 0
+
                     for facet in f:
 
-                        tempURL = URL + "&{}={}".format(group_by[i+1],urllib.parse.quote(facet)) + "&facet=" + group_by[i] + "&flimit=-1&pageSize=0"
+                        # was i+1
+                        tempURL = URL + "&{}={}".format(group_by[start+inc],urllib.parse.quote(facet)) + "&facet=" + group_by[start-1+inc] + "&flimit=-1&pageSize=0"
+                    
                         # check if user is grouping by scientific name
                         # i + 1
-                        if group_by[i+1] == "scientificName":
-                            tempURL = URL + "&{}={}".format(group_by[i+1],"%20".join(facet.split(" ")[0:2])) + "&facet=" + group_by[i] + "&flimit=-1&pageSize=0"
+                        if group_by[start+inc] == "scientificName":
+                            tempURL = URL + "&{}={}".format(group_by[start+inc],"%20".join(facet.split(" ")[0:2])) + "&facet=" + group_by[start-1+inc] + "&flimit=-1&pageSize=0"
                         else:
-                            tempURL = URL + "&{}={}".format(group_by[i+1],"%20".join(facet.split(" "))) + "&facet=" + group_by[i] + "&flimit=-1&pageSize=0"
-            
-                        if verbose:
-                            print()
-                            print("URL for querying: {}".format(tempURL))
-                            print("Method: {}".format(method))
-                            print()
+                            tempURL = URL + "&{}={}".format(group_by[start+inc],"%20".join(facet.split(" "))) + "&facet=" + group_by[start-1+inc] + "&flimit=-1&pageSize=0"
+        
+                        inc += 1
 
-                        # get the data
-                        response=requests.request(method,tempURL,headers=headers)
-                        response_json = response.json()
-                        
-                        # put data in dict
-                        for entry in response_json['facets'][0]['counts']:
-                            dict_values[group_by[i]].append(entry['name'])
-                            dict_values['count'].append(int(entry['count']))
-                            dict_values[group_by[i+1]].append(facet)
-                            for key in dict_values:
-                                if (key != group_by[i+1]) and (key != group_by[i]) and (key != 'count'):
-                                    dict_values[key].append("-")
+                    if verbose:
+                        print()
+                        print("URL for querying: {}".format(tempURL))
+                        print("Method: {}".format(method))
+                        print()
+
+                    # get the data
+                    response=requests.request(method,tempURL,headers=headers)
+                    response_json = response.json()
+                    
+                    # put data in dict
+                    #### TODO: check if this is correct
+                    for entry in response_json['facets'][0]['counts']:
+                        dict_values[group_by[start-1]].append(entry['name'])
+                        dict_values['count'].append(int(entry['count']))
+                        dict_values[group_by[start]].append(facet)
+                        for key in dict_values:
+                            if (key != group_by[start]) and (key != group_by[start-1]) and (key != 'count'):
+                                dict_values[key].append("-")
                 
@@ -240,3 +259,3 @@ # do this loop for all other atlases
                         qid_URL, method2 = get_api_url(column1="api_name",column1value="occurrences_qid")
-                        qid = requests.request(method2,qid_URL,data=payload)
+                        qid = requests.request(method2,qid_URL,data=payload,headers=headers)
                         if startingURL[-1] == "&":
@@ -259,12 +278,15 @@ tempURL = startingURL + "fq=%28qid%3A" + qid.text + "%29"
 
-                        # split each facet to make it human readable
-                        name,value = facet.split(':')
-                        value = value.replace('"', '')
-                        if name in group_by:
-                            tempURL = URL + "%20AND%20%28{}%3A%22{}%22%29".format(name,value)
-                        else:
-                            continue
-                        for group in group_by:
-                            if (group != name) and ("facets={}".format(group) not in URL):
-                                tempURL += "&facets={}".format(group)
+                        for facet in f:
+                        
+                            # split each facet to make it human readable
+                            name,value = facet.split(':')
+                            value = value.replace('"', '')
+                            if name in group_by:
+                                tempURL = URL + "%20AND%20%28{}%3A%22{}%22%29".format(name,value)
+                            else:
+                                tempURL = URL
+                                # continue
+                            for group in group_by:
+                                if (group != name) and ("facets={}".format(group) not in URL):
+                                    tempURL += "&facets={}".format(group)
 
@@ -306,3 +328,6 @@ # finalise the URL for querying
                     if atlas in ["Brazil"]:
-                        results_array = response_json[0]['fieldResult']
+                        if len(group_by) <= 2:
+                            results_array = response_json[0]['fieldResult']
+                        else:
+                            results_array = response_json[1]['fieldResult']
                     else:
@@ -315,5 +340,6 @@ results_array = response_json['facetResults'][0]['fieldResult']
                         if entry['fq'].split(":")[0] in group_by:
-                        
+
                             # add facet value to dictionary for expand
                             for facet in f:
+
                                 if len(facet.split(':')) > 2:
@@ -326,7 +352,9 @@ name_and_values = facet.split(':')
                                 value = value.replace('"','')
-                                # trying this
-                                if name in group_by:
+                                # trying this - potentially remove it
+                                if name in group_by and name not in entry['fq'].split(':'):
                                     dict_values[name].append(value)
-                            dict_values = put_entries_in_grouped_dict(entry=entry,dict_values=dict_values,expand=expand)
-            
+
+                        # potentially tab again
+                        dict_values = put_entries_in_grouped_dict(entry=entry,dict_values=dict_values,expand=expand)
+
             # format table
@@ -333,0 +361,0 @@ counts = pd.DataFrame(dict_values).reset_index(drop=True)

galah/node_config.csv

@@ -65,26 +65,2 @@ atlas,system,api_name,api_url,called_by,functional,method
 Brazil,species,species_lookup,https://bie-webservice.sibbr.gov.br/bie-index/species,atlas_taxonomy,TRUE,GET
-Canada,collections,collections_collections,http://collections.canadensys.net/ws/collection,show_all-collections,TRUE,GET
-Canada,collections,collections_datasets,http://collections.canadensys.net/ws/dataResource,show_all-datasets,TRUE,GET
-Canada,collections,collections_providers,http://collections.canadensys.net/ws/dataProvider,show_all-providers,TRUE,GET
-Canada,logger,logger_reasons,http://logger.canadensys.net/service/logger/reasons,show_all-reasons,TRUE,GET
-Canada,records,records_assertions,http://explorer-ws.canadensys.net/assertions/codes,show_all-assertions,TRUE,GET
-Canada,records,records_counts,http://explorer-ws.canadensys.net/occurrences/search,atlas_counts,TRUE,GET
-Canada,records,records_facets,http://explorer-ws.canadensys.net/occurrence/facets,"atlas_counts, show_values-fields",TRUE,GET
-Canada,records,records_fields,http://explorer-ws.canadensys.net/index/fields,show_all-fields,TRUE,GET
-Canada,records,records_occurrences,http://explorer-ws.canadensys.net/occurrences/offline/download,atlas_occurrences,TRUE,GET
-Canada,records,records_query,http://explorer-ws.canadensys.net/webportal/params,atlas_occurrences,TRUE,GET
-Canada,records,records_species,http://explorer-ws.canadensys.net/occurrences/facets/download,atlas_species,TRUE,GET
-Canada,species,names_search_single,https://api.gbif.org/v1/species/match?verbose=FALSE&name={name},search_taxa,TRUE,GET
-Estonia,collections,collections_collections,https://elurikkus.ee/collectory/ws/collection,show_all-collections,TRUE,GET
-Estonia,collections,collections_datasets,https://elurikkus.ee/collectory/ws/dataResource,show_all-datasets,TRUE,GET
-Estonia,collections,collections_providers,https://elurikkus.ee/collectory/ws/dataProvider,show_all-providers,TRUE,GET
-Estonia,records,records_assertions,https://elurikkus.ee/biocache-service/assertions/codes,show_all-assertions,TRUE,GET
-Estonia,records,records_counts,https://elurikkus.ee/biocache-service/occurrences/search,atlas_counts,TRUE,GET
-Estonia,records,records_facets,https://elurikkus.ee/biocache-service/occurrence/facets,"atlas_counts, show_values-fields",TRUE,GET
-Estonia,records,records_fields,https://elurikkus.ee/biocache-service/index/fields,show_all-fields,TRUE,GET
-Estonia,records,records_query,https://elurikkus.ee/biocache-service/webportal/params,atlas_occurrences,TRUE,POST
-Estonia,records,records_species,https://elurikkus.ee/biocache-service/occurrences/facets/download,atlas_species,TRUE,GET
-Estonia,species,names_search_single,https://elurikkus.ee/bie-index/search?q={name}&pageSize=5,search_taxa,TRUE,GET
-Estonia,species,species_children,https://elurikkus.ee/bie-index/childConcepts/,atlas_taxonomy,TRUE,GET
-Estonia,species,species_lookup,https://elurikkus.ee/bie-index/species,atlas_taxonomy,TRUE,GET
 France,collections,collections_collections,https://openobs.mnhn.fr/collectory/ws/collection,show_all-collections,TRUE,GET
@@ -127,16 +103,2 @@ France,collections,collections_datasets,https://openobs.mnhn.fr/collectory/ws/dataResource,show_all-datasets,TRUE,GET
 Guatemala,species,species_lookup,https://snib.conap.gob.gt/especies-ws/species,atlas_taxonomy,TRUE,GET
-Portugal,collections,collections_collections,https://metadados.gbif.pt/ws/collection,show_all-collections,TRUE,GET
-Portugal,collections,collections_datasets,https://metadados.gbif.pt/ws/dataResource,show_all-datasets,TRUE,GET
-Portugal,collections,collections_providers,https://metadados.gbif.pt/ws/dataProvider,show_all-providers,TRUE,GET
-Portugal,images,image_licences,https://imagens.gbif.pt/ws/licence,show_all-licences,TRUE,GET
-Portugal,images,image_metadata,https://imagens.gbif.pt/ws/image/,media_metadata,FALSE,GET
-Portugal,logger,logger_reasons,https://logger.gbif.pt/service/logger/reasons,show_all-reasons,TRUE,GET
-Portugal,records,records_assertions,https://registos-ws.gbif.pt/assertions/codes,show_all-assertions,TRUE,GET
-Portugal,records,records_counts,https://registos-ws.gbif.pt/occurrences/search,atlas_counts,TRUE,GET
-Portugal,records,records_facets,https://registos-ws.gbif.pt/occurrence/facets,"atlas_counts, show_values-fields",TRUE,GET
-Portugal,records,records_fields,https://registos-ws.gbif.pt/index/fields,show_all-fields,TRUE,GET
-Portugal,records,records_query,https://registos-ws.gbif.pt/webportal/params,atlas_occurrences,TRUE,GET
-Portugal,records,records_species,https://registos-ws.gbif.pt/occurrences/facets/download,atlas_species,TRUE,GET
-Portugal,spatial,spatial_layers,https://espacial.gbif.pt/ws/layers,show_all-fields,TRUE,GET
-Portugal,species,names_search_single,https://api.gbif.org/v1/species/match?verbose=FALSE&name={name},search_taxa,TRUE,GET
 Spain,collections,collections_collections,https://colecciones.gbif.es/ws/collection,show_all-collections,TRUE,GET
@@ -184,20 +146,2 @@ Spain,collections,collections_datasets,https://colecciones.gbif.es/ws/dataResource,show_all-datasets,TRUE,GET
 Sweden,name-matching,names_search_multiple,https://namematching.biodiversitydata.se/api/searchByClassification,search_taxa,TRUE,GET
-Sweden,name-matching,names_search_single,https://namematching.biodiversitydata.se/api/search?q={name},search_taxa,TRUE,GET
-United Kingdom,collections,collections_collections,https://registry.nbnatlas.org/ws/collection,show_all-collections,TRUE,GET
-United Kingdom,collections,collections_datasets,https://registry.nbnatlas.org/ws/dataResource,show_all-datasets,TRUE,GET
-United Kingdom,collections,collections_providers,https://registry.nbnatlas.org/ws/dataProvider,show_all-providers,TRUE,GET
-United Kingdom,images,image_licences,https://images.nbnatlas.org/licence,show_all-licences,TRUE,GET
-United Kingdom,images,image_metadata,https://images.nbnatlas.org/image/,media_metadata,FALSE,GET
-United Kingdom,lists,lists_all,https://lists.nbnatlas.org/ws/speciesList,show_all-lists,TRUE,GET
-United Kingdom,lists,lists_lookup,https://lists.nbnatlas.org/ws/speciesListItems/{list_id},show_values-lists,TRUE,GET
-United Kingdom,logger,logger_reasons,https://logger.nbnatlas.org/service/logger/reasons,show_all-reasons,TRUE,GET
-United Kingdom,records,records_assertions,https://records-ws.nbnatlas.org/assertions/codes,show_all-assertions,TRUE,GET
-United Kingdom,records,records_counts,https://records-ws.nbnatlas.org/occurrences/search,atlas_counts,TRUE,GET
-United Kingdom,records,records_facets,https://records-ws.nbnatlas.org/occurrence/facets,"atlas_counts, show_values-fields",TRUE,GET
-United Kingdom,records,records_fields,https://records-ws.nbnatlas.org/index/fields,show_all-fields,TRUE,GET
-United Kingdom,records,records_occurrences,https://records-ws.nbnatlas.org/occurrences/offline/download,atlas_occurrences,FALSE,GET
-United Kingdom,records,records_query,https://records-ws.nbnatlas.org/webportal/params,atlas_occurrences,TRUE,GET
-United Kingdom,records,records_species,https://records-ws.nbnatlas.org/occurrences/facets/download,atlas_species,TRUE,GET
-United Kingdom,species,names_search_single,https://species-ws.nbnatlas.org/search?q={name}&pageSize=5,search_taxa,TRUE,GET
-United Kingdom,species,species_children,https://species-ws.nbnatlas.org/childConcepts/,atlas_taxonomy,TRUE,GET
-United Kingdom,species,species_lookup,https://species-ws.nbnatlas.org/species,atlas_taxonomy,TRUE,GET
+Sweden,name-matching,names_search_single,https://namematching.biodiversitydata.se/api/search?q={name},search_taxa,TRUE,GET

galah/search_all.py

@@ -245,3 +245,3 @@ from .show_all import show_all
 
-        # call show_all to get all the possible values
+        # call show_all to get all the possible values``
         dataFrame = show_all(licences=True)
@@ -248,0 +248,0 @@

galah/search_taxa.py

@@ -7,2 +7,3 @@ import requests
 from .common_dictionaries import SEARCH_TAXA_ENTRIES,SEARCH_TAXA_FIELDS,TAXONCONCEPT_NAMES,VERNACULAR_NAMES,atlases
+from .version import __version__
 
@@ -88,10 +89,4 @@ # testing
 
-    headers = {}
+    headers = {"User-Agent": "galah-python/{}".format(__version__)}
 
-    # get headers for ALA
-    #if configs['galahSettings']['atlas'] == "Australia":
-    #    headers = {"x-api-key": configs["galahSettings"]["ALA_API_key"]}
-    #else:
-    #    headers = {}
-
     # get atlas
@@ -240,3 +235,3 @@ atlas = configs['galahSettings']['atlas']
             for name in taxa:
-
+                
                 # get base URL for querying
@@ -256,3 +251,3 @@ baseURL, method = get_api_url(column1='called_by',column1value='search_taxa',column2='api_name',column2value='names_search_single')
                 # get the response
-                response = requests.request(method,URL,headers=headers)
+                response = requests.request(method=method,url=URL,headers=headers)
                 response_json = response.json()
@@ -266,15 +261,4 @@
 
-                # Check for the Swedish atlas
-                if atlas in ["Sweden"]: 
-                    raw_data = [] 
-                    if SEARCH_TAXA_ENTRIES[atlas][0] in response_json:
-                        for item in response_json[SEARCH_TAXA_ENTRIES[atlas][0]][SEARCH_TAXA_ENTRIES[atlas][1]]:
-                            if name.lower() in item['scientificName'].lower():
-                                raw_data = item
-                                break
-                    if raw_data is None:
-                        continue
-
                 # check for Austrian, Brazilian, French or Guatemalan atlas
-                elif atlas in ["Austria","Brazil","France", "Guatemala"]:
+                elif atlas in ["Austria","Brazil","France", "Guatemala","United Kingdom","UK"]: # try UK here
                     raw_data = None
@@ -290,3 +274,3 @@ if SEARCH_TAXA_ENTRIES[atlas][0] in response_json:
                 # check for Australian, Global, or Spanish atlas
-                elif atlas in ["Australia","Global","GBIF","Spain"]:
+                elif atlas in ["Australia","Global","GBIF","Spain","Sweden"]: # try Sweden here
                     raw_data = response_json
@@ -293,0 +277,0 @@ if atlas in ["Global","GBIF"]:

galah/show_all.py

@@ -7,2 +7,3 @@ import os
 from .common_functions import get_response_show_all
+from .version import __version__
 
@@ -79,9 +80,4 @@ '''
 
-    headers = {}
+    headers = {"User-Agent": "galah-python/{}".format(__version__)}
 
-    #if atlas in ["Australia","ALA"]:
-    #    headers = {"x-api-key": configs["galahSettings"]["ALA_API_key"]}
-    #else:
-    #    headers = {}
-
     # set up the option for getting back multiple values
@@ -279,6 +275,6 @@ return_array=[]
                 # build layer id from this
-                spatial_values["type"].replace("Contextual","cl",inplace=True)
-                spatial_values["type"].replace("Environmental","el",inplace=True)
+                spatial_values.loc[spatial_values["type"] == "Contextual","type"] = "cl"
+                spatial_values.loc[spatial_values["type"] == "Environmental","type"] = "el"
                 spatial_layers["id"] =  spatial_values["type"].astype(str) + spatial_values["id"].astype(str)
-
+                
                 # build descriptions from these
@@ -285,0 +281,0 @@ spatial_layers["description"] = spatial_values['displayname'] + " " + spatial_values['description']

METADATA

 Metadata-Version: 2.1
 Name: galah-python
-Version: 0.8.3
+Version: 0.9.0
 Summary: Get counts and information on species from many different atlases
-Home-page: 
+Home-page: https://galah.ala.org.au/Python/
 Author: Amanda Buyan
@@ -7,0 +7,0 @@ Author-email: [e-mail]

RECORD

 galah/ALA_keys.json,sha256=Tc2amWI8852cFovenRyw3TlUINMQz2CAgh43piiJfGY,183
-galah/__init__.py,sha256=zdhA-NAPKHUnQ5Q6KxKNm1ebsKzNM_zhUof2eRYjOsw,1565
+galah/Countries_Downloaded_In_21July2023.xlsx,sha256=G4VsVxBMHv-oKtvoSAwX7PQLWMPHnp84zZYKOWhYuWQ,9887
+galah/__init__.py,sha256=icvkFYyXYDTCwR4GbfR2xU4iCBWuxpRKf3YLL0LN4d8,1576
 galah/apply_data_profile.py,sha256=Om0BsN-mZ5XwT_-cRbny_okE8BGq22wgT4SWdW1-KF4,2042
 galah/atlas_citation.py,sha256=vRWFt-06YoYPcMcThsWnfGbFy62pl8eeM0I-PlshaV4,2503
-galah/atlas_counts.py,sha256=h_6WlMQU7kfTGBZs8SQa4TlReH4kK_pcT9xjwycTqKg,11629
-galah/atlas_media.py,sha256=ngEixdz1HkjO7l3eThRU-CgjcyvLY4jH8hFLOKhhP2A,14306
-galah/atlas_occurrences.py,sha256=5oL2uGwKa1XeK2_55FJSFiF3mTBM6TH4PWjgAAuycTM,19748
-galah/atlas_species.py,sha256=eSmEWLB7yC5wQhr1Qe8vZYY3qnTgFb05fbMyQGardUw,10293
+galah/atlas_counts.py,sha256=um-lzph6HpUi8oxGUkv3lcjVKFhe0wfreCV-q1PZROI,11609
+galah/atlas_media.py,sha256=178rpW3oN3dOV-L5CMfp8hh6L-x4C56HefOfWqeAA0k,14240
+galah/atlas_occurrences.py,sha256=zIRCzuzK7c4_DC-f9enqxCCYPBySwlsKjHfwrRmLhqA,19681
+galah/atlas_species.py,sha256=C4ZVBhOyZhWqJRfQcS3EQmlFjoY_mxcCL1XNw3xHDW4,10312
 galah/atlas_taxonomy.py,sha256=YTxutynekCk_6DHwBD-znxHAuUIg1qkEmIUoRcaOTFA,4408
-galah/common_dictionaries.py,sha256=33SNd-qs85tWp9tcERrqxiOIY0zMNMe3MhjVHk24xuQ,10446
-galah/common_functions.py,sha256=UWSmzs3MWbm_F4hTZyT-5kD3Js2ynm7KhFLa_p7Hjh0,12565
-galah/config.ini,sha256=AyFdfChPH8Slayhu8f3Wge3JfQbE1R4OVr35zqMBS_Q,282
+galah/common_dictionaries.py,sha256=5lKo8d1FU6TkxoL7szuSy2B3F7Vr7U55hQov9fJi37U,11356
+galah/common_functions.py,sha256=6Tu0S7PqYOePkwVl2XDD1PAZvhTk6crdcDk0gSoPB60,12979
+galah/config.ini,sha256=I-CAiFEpCXNWmVK4dpmQH0Y8jAdwgqnA7Smnd3Ihblo,140
+galah/config.ini.default,sha256=I-CAiFEpCXNWmVK4dpmQH0Y8jAdwgqnA7Smnd3Ihblo,140
 galah/galah_config.py,sha256=wmLNHpKy0Hm6eLuK0l_Dp5lrsvCfxhy50DOWlnKBIa0,4779
-galah/galah_filter.py,sha256=RJac7L2oUrvyETDX-HSTiIXRHa0aagZGZ8ipA4097Ww,10430
+galah/galah_filter.py,sha256=KustG1fO1usSX7-zneROLu6e1ikk3-r5df3o2Ivu1ws,10460
 galah/galah_gbif_filters.py,sha256=gWLfFtz_ukVz0D1kothJAVsoZUuVWBZUvxQzVC8gDgM,2787
 galah/galah_geolocate.py,sha256=EF1cGBKEDIv6hRbqBZJFbyFYsPYcsGe7-R7ipB3JdQE,3624
-galah/galah_group_by.py,sha256=pM5iI_l-W47Lsq8XdfZiFFQ7oUk5pHBLuag6-BNrOKQ,16882
+galah/galah_group_by.py,sha256=pJh3wAOtlhRsRgyBc1xiFsQMt8IjiMW_JCDLlT94Wyg,17873
 galah/galah_select.py,sha256=4IzAwC7je2DKgaxGigqgF1fOUXOMQS5nE2i6BZd4b1I,1712
@@ -23,11 +25,44 @@ galah/gbif_assertions.csv,sha256=01vlw2yW6LyafSqLswlzmzqOL3XwrJ6Msd1KwHCZwJQ,6550
 galah/get_api_url.py,sha256=fNnXAgTFZritfXAh3nTxRrNnO8KnQ-qtsUDpOwqm6uM,4797
-galah/node_config.csv,sha256=v5wQj_gIKkGz3kg5RwwoWdf6SArbwWH-VCMIf3XDOxw,22992
-galah/search_all.py,sha256=CKP9Xzvl0wRizGyogF9dUUJlUrVxGiXHBoXN65eO9Vc,17888
-galah/search_taxa.py,sha256=F95zQ-7QOifgeTYjOaNMIsh5QeToKdS24GO8tPF18bc,15393
+galah/node_config.csv,sha256=oqQExgCeA8w-CoHk2Ba5SY1Z0lYQTa8k_6O_DJnTaJI,16636
+galah/node_config_0.1.0.csv,sha256=W6ql0rRNITTlOVe0uc8Xn3mnWAx6f2SbaGeT6uvyV2c,7358
+galah/node_config_dest.csv,sha256=9Q_iUxnUKQNsuGHXZ0_yHW6wI0eTIBh0OszxJQYs4Xg,12352
+galah/node_config_dev.csv,sha256=xT2X0pjt4pxHxiHSqSWJMuT40ZBlDGMIok5xTXjdpWA,21494
+galah/node_config_full.csv,sha256=20dHet-JZTeU2qSzrkFp0xnTwHehzUqNfVcpQe4xtQU,21688
+galah/node_config_old.csv,sha256=rQDBZoHZShFxMmNXzE_O6DVTPsm1q5r3DIw-Y4xMX78,12345
+galah/search_all.py,sha256=rmTNIlXz1KO3rtXBRlMPydZ6GdKTcGD77ZbRmD8pmkg,17890
+galah/search_taxa.py,sha256=9wcxLVplWPRvZp7Xdb9FT1Su2NhUFbAZlAoDZbrDTUU,14829
 galah/search_values.py,sha256=QP1WLi3SraIpZsuI8NiJC2UM5a03Uo1rysrLsD1aGiA,2300
-galah/show_all.py,sha256=YC-p7VtksPg-hp90wKICe5rFZ01bFEfxwA3MhHM-n0w,22588
+galah/show_all.py,sha256=pHkDr9gzMZjzfkJ264humD1uHKwx0cDY0RzizvDtTUI,22562
 galah/show_values.py,sha256=r1mn8T2ulzOf4dm1v0k_vXYkQXQp6K4mi-2tW6fmJbU,6093
-galah_python-0.8.3.dist-info/METADATA,sha256=38WGWqNmOkDh2LM98CYWTwBuqjVBExmttTvFJaw2jC0,678
-galah_python-0.8.3.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
-galah_python-0.8.3.dist-info/top_level.txt,sha256=kfWzvRF4Ut3of0Zi7jXK3dzb-mTOEvaXSdtCyXkrQkI,6
-galah_python-0.8.3.dist-info/RECORD,,
+galah/version.py,sha256=sZISoV4NxuaLouHwZ0QGjbyppI0-PnriqMCjmmV4l6Y,145
+galah/.idea/.gitignore,sha256=qeVPxPCLyX2CwEvYb_N9OvhLqe9K2H_Py0ONq2Iuiqo,47
+galah/.idea/galah.iml,sha256=2MMJ7h4gI3HJojp_o8835x5uT1wpAQ41MHIxGm8M86I,336
+galah/.idea/misc.xml,sha256=DTM0NEC_v1AfwCq4kyH31Z9eoGztiBA9p3NqLUkzmhw,204
+galah/.idea/modules.xml,sha256=HMc3u5a3PSWBBXct4noQqvWwENa7jnAx20gZgC-9sm8,262
+galah/.idea/vcs.xml,sha256=ZEt22h_UABai6qzUWvAjkIdEIg4UUHoZBGut3J8go2M,189
+galah/.idea/inspectionProfiles/profiles_settings.xml,sha256=YXLFmX7rPNGcnKK1uX1uKYPN0fpgskYNe7t0BV7cqkY,174
+galah/__pycache__/__init__.cpython-311.pyc,sha256=7GJ9-ZF9ZuoL_x-9k2Lepb4efPb3NW1hcvEAC0-tKIM,1061
+galah/__pycache__/apply_data_profile.cpython-311.pyc,sha256=IHXaO3cCXwejYIGZVCTFh3mKkKhekXpYvOf203hR1P8,1968
+galah/__pycache__/atlas_counts.cpython-311.pyc,sha256=I3wXWiy2Je7fZz8PKUbnRb7MnycPMXiFpU52xe3h-XM,10085
+galah/__pycache__/atlas_media.cpython-311.pyc,sha256=yObeK2QtAa8zJ_A4F7Md-dVqIl26VhjOpFAQwjXtRIA,12683
+galah/__pycache__/atlas_occurrences.cpython-311.pyc,sha256=grkb7SRyRAGdQzRnzJtxQ1A3D6b57uevOvJGuQByJ3g,19474
+galah/__pycache__/atlas_species.cpython-311.pyc,sha256=6Qhfi-vHZN1Bz_xuM338sCX0YwIgIEk5-1BjZo3RRIU,10976
+galah/__pycache__/common_dictionaries.cpython-311.pyc,sha256=dwBwG1uhfAPWG0SKaqUEg4-Adtq_gpardp_cw03BCnk,5035
+galah/__pycache__/common_functions.cpython-311.pyc,sha256=DJm8gQBF_lfnjkdNGAKp1S4YjViW7QNcd5d2VOPuNsk,16939
+galah/__pycache__/galah_config.cpython-311.pyc,sha256=9Sml2kYmNwzHkQtWkcKnl9s5nZiNMNA9ATtu6os8Wxs,4373
+galah/__pycache__/galah_filter.cpython-311.pyc,sha256=vjJSP0t5rVihRyeNVytocTsOW6uSTthCGf2bFLHCNv4,11127
+galah/__pycache__/galah_geolocate.cpython-311.pyc,sha256=pIQcEnpNDJFG566FeMOCWsQOnvglv1xRL0jJKyk6JZs,4511
+galah/__pycache__/galah_group_by.cpython-311.pyc,sha256=u2cpW8QPlQ22hludAYOJeZjbxvfO6KvOcihnAoyn6mY,16163
+galah/__pycache__/galah_select.cpython-311.pyc,sha256=YnPMdOC6z2loVT8_Di8JeK4MrTsRyGaNj-lTIJ2jxUg,2099
+galah/__pycache__/generate_jwt_token.cpython-311.pyc,sha256=hr78GFx5FSokJ0W6UOdvOJQIcZ_kqCxDryewRif1_tc,3192
+galah/__pycache__/get_api_url.cpython-311.pyc,sha256=c2Qb1SW9nHUtVS_T6Ni9uY0ljB99BpSRIaCJLe8zn2Q,6427
+galah/__pycache__/search_all.cpython-311.pyc,sha256=io-mBJEx3-Ik6QKYVgcaAt7mYgIyRM_qblbKEnpAHRU,16786
+galah/__pycache__/search_taxa.cpython-311.pyc,sha256=KTzsocxXLDYOD-6KZmi8zVj02Zi2o6pmO-aKux9KvgM,14606
+galah/__pycache__/search_values.cpython-311.pyc,sha256=o_vadR5jgIAYZdksI-OmJABdPZxb5we-Vc_1KAlqRgM,3020
+galah/__pycache__/show_all.cpython-311.pyc,sha256=gq-aMOibpnj78WxBSQWbpJfdOmLYgX2PxO-AP_zDKVk,19356
+galah/__pycache__/show_values.cpython-311.pyc,sha256=593H7M7fM60dh4prAUYxIcNhn4odbB8FVU4x2wZTHCs,4703
+galah/__pycache__/version.cpython-311.pyc,sha256=o6_8KBvzOUFfqZhx-msq-Gh-Wh4sCpEm-lblf1-beZ4,201
+galah_python-0.9.0.dist-info/METADATA,sha256=dgNRS6Vxe_K1riNqwMWYsSNaa87aIADRbBkh-iQkcNQ,710
+galah_python-0.9.0.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
+galah_python-0.9.0.dist-info/top_level.txt,sha256=kfWzvRF4Ut3of0Zi7jXK3dzb-mTOEvaXSdtCyXkrQkI,6
+galah_python-0.9.0.dist-info/RECORD,,

WHEEL

 Wheel-Version: 1.0
-Generator: bdist_wheel (0.42.0)
+Generator: bdist_wheel (0.43.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

Alert delta unavailable

Currently unable to show alert delta for PyPI packages.

No metric changes