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gumpy

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gumpy - pypi Package Compare versions

Comparing version
1.3.5
to
1.3.6
+1
-1
gumpy.egg-info/PKG-INFO
Metadata-Version: 2.1
Name: gumpy
Version: 1.3.5
Version: 1.3.6
Summary: Genetics with Numpy

@@ -5,0 +5,0 @@ Home-page: https://github.com/oxfordmmm/gumpy

@@ -83,3 +83,3 @@ """

assert len(record.filter.items()) >= 0, "A record has more than 1 filter set!"
self.filter: str | None
self.filter: list[str] | None
if len(record.filter.items()) == 0:

@@ -89,5 +89,5 @@ self.filter = None

else:
self.filter = str(record.filter.items()[0][0])
self.filter = [str(x) for x in record.filter.keys()]
self.is_filter_pass = (
True if record.filter.items()[0][0] == "PASS" else False
True if len(self.filter) == 1 and self.filter == ["PASS"] else False
)

@@ -162,4 +162,4 @@

if self.is_null:
# Override filter fails on nulls to enforce that they are detected
if self.is_null and self.filter == ["MIN_FRS"]:
# Override MIN_FRS filter fails on nulls to enforce that they are detected
self.is_filter_pass = True

@@ -184,3 +184,3 @@

else:
s += self.filter + "\t"
s += ",".join(self.filter) + "\t"
for val in self.values.keys():

@@ -568,3 +568,3 @@ if val == "POS":

# We only want to allow these through if the filter fail is MIN_FRS
if record.filter == "MIN_FRS":
if record.filter == ["MIN_FRS"]:
# Allow MIN_FRS

@@ -571,0 +571,0 @@ variant = record.ref

Metadata-Version: 2.1
Name: gumpy
Version: 1.3.5
Version: 1.3.6
Summary: Genetics with Numpy

@@ -5,0 +5,0 @@ Home-page: https://github.com/oxfordmmm/gumpy

@@ -1,2 +0,1 @@

1.3.5
1.3.6