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gumpy

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gumpy - pypi Package Compare versions

Comparing version
1.3.6
to
1.3.7
+1
-1
gumpy.egg-info/PKG-INFO
Metadata-Version: 2.1
Name: gumpy
Version: 1.3.6
Version: 1.3.7
Summary: Genetics with Numpy

@@ -5,0 +5,0 @@ Home-page: https://github.com/oxfordmmm/gumpy

@@ -160,4 +160,9 @@ """

if self.is_null and self.filter == ["MIN_FRS"]:
# Override MIN_FRS filter fails on nulls to enforce that they are detected
if self.is_null and self.filter is not None:
# Override specifc filters for nulls to ensure they are detected
allowed_filters = ["MIN_FRS", "MIN_DP", "MIN_GCP", "NO_DATA"]
for f in self.filter:
if f not in allowed_filters:
self.is_filter_pass = False
break
self.is_filter_pass = True

@@ -564,4 +569,4 @@

):
# We only want to allow these through if the filter fail is MIN_FRS
if record.filter == ["MIN_FRS"]:
# We only want to allow these through if the filter fail contains MIN_FRS
if "MIN_FRS" in record.filter:
# Allow MIN_FRS

@@ -568,0 +573,0 @@ variant = record.ref

Metadata-Version: 2.1
Name: gumpy
Version: 1.3.6
Version: 1.3.7
Summary: Genetics with Numpy

@@ -5,0 +5,0 @@ Home-page: https://github.com/oxfordmmm/gumpy

@@ -1,1 +0,1 @@

1.3.6
1.3.7