gumpy
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| Metadata-Version: 2.1 | ||
| Name: gumpy | ||
| Version: 1.3.6 | ||
| Version: 1.3.7 | ||
| Summary: Genetics with Numpy | ||
@@ -5,0 +5,0 @@ Home-page: https://github.com/oxfordmmm/gumpy |
@@ -160,4 +160,9 @@ """ | ||
| if self.is_null and self.filter == ["MIN_FRS"]: | ||
| # Override MIN_FRS filter fails on nulls to enforce that they are detected | ||
| if self.is_null and self.filter is not None: | ||
| # Override specifc filters for nulls to ensure they are detected | ||
| allowed_filters = ["MIN_FRS", "MIN_DP", "MIN_GCP", "NO_DATA"] | ||
| for f in self.filter: | ||
| if f not in allowed_filters: | ||
| self.is_filter_pass = False | ||
| break | ||
| self.is_filter_pass = True | ||
@@ -564,4 +569,4 @@ | ||
| ): | ||
| # We only want to allow these through if the filter fail is MIN_FRS | ||
| if record.filter == ["MIN_FRS"]: | ||
| # We only want to allow these through if the filter fail contains MIN_FRS | ||
| if "MIN_FRS" in record.filter: | ||
| # Allow MIN_FRS | ||
@@ -568,0 +573,0 @@ variant = record.ref |
+1
-1
| Metadata-Version: 2.1 | ||
| Name: gumpy | ||
| Version: 1.3.6 | ||
| Version: 1.3.7 | ||
| Summary: Genetics with Numpy | ||
@@ -5,0 +5,0 @@ Home-page: https://github.com/oxfordmmm/gumpy |
+1
-1
@@ -1,1 +0,1 @@ | ||
| 1.3.6 | ||
| 1.3.7 |
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