libSps is a versatile C++ library designed for efficiently analyzing n-dimensional data. Specifically, it implements constant-time hyperrectangle count queries using a sparse prefix sum index. libSps is available as a header-only library for C++ as well as a Python 3 module.
The library is ideal for processing interactome data (https://en.wikipedia.org/wiki/Chromosome_conformation_capture), and is therefore used in Smoother (https://github.com/Siegel-Lab/BioSmoother).
libSps's documentation is available at https://libsps.readthedocs.io/.
FAQs
O(1) region count queries using sparse prefix sums
We found that libsps demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
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