mimseq - npm Package Compare versions

Comparing version 1.3.3 to 1.3.4

mimseq/data/ce11-eColitK/ce11-tRNAs_name_map.txt

+tRNAscan-SE_id	GtRNAdb_id
+chrI.trna1	tRX-Lys-NNN-7-1
+chrI.trna10	tRNA-Ile-TAT-1-1
+chrI.trna11	tRX-Lys-NNN-8-1
+chrI.trna12	tRX-Lys-NNN-2-1
+chrI.trna13	tRNA-Arg-TCG-2-1
+chrI.trna14	tRNA-Gly-TCC-1-2
+chrI.trna15	tRNA-Gly-TCC-1-4
+chrI.trna16	tRNA-Gly-TCC-1-6
+chrI.trna17	tRNA-Gln-TTG-2-1
+chrI.trna18	tRNA-Ile-TAT-1-2
+chrI.trna19	tRNA-Ser-TGA-3-1
+chrI.trna2	tRNA-Leu-CAG-2-1
+chrI.trna20	tRX-Lys-NNN-7-3
+chrI.trna21	tRNA-Glu-TTC-1-1
+chrI.trna22	tRNA-Gly-GCC-1-2
+chrI.trna23	tRNA-Gly-CCC-1-2
+chrI.trna24	tRNA-Asp-GTC-2-1
+chrI.trna25	tRX-Lys-NNN-8-2
+chrI.trna26	tRNA-Gly-TCC-1-8
+chrI.trna27	tRNA-Phe-GAA-6-1
+chrI.trna28	tRNA-Gly-GCC-4-1
+chrI.trna29	tRNA-Cys-GCA-1-2
+chrI.trna3	tRNA-Arg-TCT-2-1
+chrI.trna30	tRNA-Lys-CTT-1-4
+chrI.trna31	tRNA-Glu-CTC-1-3
+chrI.trna32	tRNA-Glu-CTC-1-4
+chrI.trna33	tRNA-Val-AAC-2-1
+chrI.trna34	tRNA-iMet-CAT-1-1
+chrI.trna35	tRNA-Arg-TCT-1-1
+chrI.trna36	tRNA-iMet-CAT-1-3
+chrI.trna37	tRNA-Ala-AGC-4-1
+chrI.trna38	tRNA-Val-AAC-2-3
+chrI.trna39	tRNA-Gly-TCC-5-1
+chrI.trna4	tRNA-Arg-TCT-2-2
+chrI.trna40	tRNA-Ser-GCT-1-1
+chrI.trna41	tRNA-Gly-TCC-1-10
+chrI.trna42	tRNA-Gly-TCC-1-9
+chrI.trna43	tRNA-Thr-TGT-1-1
+chrI.trna44	tRNA-Lys-CTT-1-5
+chrI.trna45	tRNA-Val-AAC-2-2
+chrI.trna46	tRNA-iMet-CAT-1-2
+chrI.trna47	tRNA-Glu-CTC-1-2
+chrI.trna48	tRNA-Ser-CGA-1-1
+chrI.trna49	tRNA-Leu-AAG-2-2
+chrI.trna5	tRNA-Tyr-GTA-2-1
+chrI.trna50	tRNA-Lys-CTT-1-3
+chrI.trna51	tRNA-Lys-CTT-1-2
+chrI.trna52	tRNA-Gly-TCC-1-7
+chrI.trna53	tRX-Lys-NNN-8-3
+chrI.trna54	tRNA-Gly-CCC-1-3
+chrI.trna55	tRNA-Gly-CCC-1-1
+chrI.trna56	tRX-Pro-NNN-4-1
+chrI.trna57	tRNA-Ile-TAT-1-3
+chrI.trna58	tRNA-Gly-TCC-1-5
+chrI.trna59	tRNA-Gly-TCC-1-3
+chrI.trna6	tRNA-Lys-CTT-1-1
+chrI.trna60	tRNA-Gly-TCC-1-1
+chrI.trna61	tRNA-Pro-AGG-4-2
+chrI.trna62	tRNA-Asn-GTT-1-1
+chrI.trna63	tRX-Und-NNN-1-1
+chrI.trna64	tRNA-Glu-CTC-1-1
+chrI.trna65	tRNA-Asn-GTT-3-1
+chrI.trna66	tRNA-Lys-CTT-2-1
+chrI.trna67	tRNA-Ile-AAT-1-1
+chrI.trna68	tRNA-Leu-AAG-2-1
+chrI.trna69	tRNA-Pro-AGG-4-1
+chrI.trna7	tRNA-Ile-AAT-1-2
+chrI.trna70	tRNA-Arg-ACG-1-1
+chrI.trna71	tRNA-Met-CAT-1-1
+chrI.trna72	tRNA-Gly-GCC-1-1
+chrI.trna73	tRNA-Trp-CCA-1-1
+chrI.trna8	tRNA-Cys-GCA-1-1
+chrI.trna9	tRX-Lys-NNN-7-2
+chrII.trna1	tRX-Pro-NNN-11-1
+chrII.trna10	tRNA-Glu-CTC-1-5
+chrII.trna11	tRNA-Lys-TTT-1-1
+chrII.trna12	tRNA-Leu-TAA-3-1
+chrII.trna13	tRNA-Leu-TAG-1-1
+chrII.trna14	tRNA-Glu-TTC-1-2
+chrII.trna15	tRNA-Ala-TGC-2-1
+chrII.trna16	tRNA-Thr-AGT-3-1
+chrII.trna17	tRNA-Arg-TCG-2-2
+chrII.trna18	tRX-Lys-NNN-3-1
+chrII.trna19	tRX-Met-NNN-2-1
+chrII.trna2	tRNA-Ser-AGA-2-1
+chrII.trna20	tRNA-Pro-TGG-1-1
+chrII.trna21	tRNA-Pro-TGG-1-2
+chrII.trna22	tRNA-Ala-TGC-1-2
+chrII.trna23	tRX-Lys-NNN-9-1
+chrII.trna24	tRNA-Val-TAC-4-1
+chrII.trna25	tRNA-Ile-AAT-1-6
+chrII.trna26	tRNA-Ile-AAT-1-7
+chrII.trna27	tRNA-Trp-CCA-3-1
+chrII.trna28	tRNA-Ala-AGC-1-4
+chrII.trna29	tRNA-Ala-TGC-1-3
+chrII.trna3	tRNA-Leu-AAG-2-5
+chrII.trna30	tRX-Asn-NNN-2-1
+chrII.trna31	tRNA-Leu-AAG-1-1
+chrII.trna32	tRNA-Gln-TTG-1-2
+chrII.trna33	tRNA-Arg-CCG-1-1
+chrII.trna34	tRNA-Leu-AAG-2-7
+chrII.trna35	tRNA-Lys-TTT-1-2
+chrII.trna36	tRNA-iMet-CAT-1-4
+chrII.trna37	tRX-Ser-NNN-1-1
+chrII.trna38	tRX-Lys-NNN-7-4
+chrII.trna39	tRNA-Ala-TGC-1-1
+chrII.trna4	tRNA-Gly-GCC-1-4
+chrII.trna40	tRNA-Lys-CTT-1-9
+chrII.trna41	tRNA-Pro-TGG-7-1
+chrII.trna42	tRNA-Pro-TGG-2-1
+chrII.trna43	tRNA-Phe-GAA-1-1
+chrII.trna44	tRNA-Tyr-GTA-4-1
+chrII.trna45	tRNA-Leu-TAA-2-1
+chrII.trna46	tRNA-Gln-TTG-1-1
+chrII.trna47	tRNA-Ala-AGC-1-3
+chrII.trna48	tRNA-Gly-GCC-5-1
+chrII.trna49	tRNA-Leu-TAA-1-1
+chrII.trna5	tRNA-Ser-AGA-2-2
+chrII.trna50	tRNA-Val-TAC-3-1
+chrII.trna51	tRNA-Ile-AAT-1-4
+chrII.trna52	tRNA-Ala-AGC-5-1
+chrII.trna53	tRX-Gln-NNN-5-1
+chrII.trna54	tRNA-Lys-CTT-1-8
+chrII.trna55	tRNA-Thr-AGT-1-2
+chrII.trna56	tRNA-His-GTG-2-1
+chrII.trna57	tRNA-Lys-CTT-1-7
+chrII.trna58	tRNA-Thr-AGT-2-1
+chrII.trna59	tRNA-Lys-CTT-1-6
+chrII.trna6	tRNA-Ala-AGC-1-1
+chrII.trna60	tRNA-Thr-AGT-1-1
+chrII.trna61	tRNA-Gly-GCC-1-3
+chrII.trna62	tRNA-Leu-AAG-2-6
+chrII.trna63	tRNA-Leu-AAG-2-4
+chrII.trna64	tRNA-Leu-AAG-2-3
+chrII.trna65	tRX-Thr-NNN-4-1
+chrII.trna66	tRX-Thr-NNN-5-1
+chrII.trna7	tRNA-Ile-AAT-1-3
+chrII.trna8	tRNA-Ile-AAT-1-5
+chrII.trna9	tRNA-Ala-AGC-1-2
+chrIII.trna1	tRNA-Tyr-GTA-2-2
+chrIII.trna10	tRX-Leu-NNN-5-1
+chrIII.trna11	tRX-Pro-NNN-7-1
+chrIII.trna12	tRX-Pro-NNN-9-1
+chrIII.trna13	tRNA-Tyr-GTA-7-1
+chrIII.trna14	tRNA-Lys-CTT-1-10
+chrIII.trna15	tRNA-Leu-CAA-1-1
+chrIII.trna16	tRNA-Thr-TGT-1-2
+chrIII.trna17	tRNA-Gly-GCC-1-5
+chrIII.trna18	tRNA-Leu-AAG-5-1
+chrIII.trna19	tRX-Phe-NNN-2-1
+chrIII.trna2	tRNA-Gly-TCC-1-11
+chrIII.trna20	tRNA-Ser-AGA-2-3
+chrIII.trna21	tRNA-Ser-CGA-3-1
+chrIII.trna22	tRNA-Ala-AGC-7-1
+chrIII.trna23	tRNA-Asn-GTT-1-2
+chrIII.trna24	tRNA-Gly-TCC-1-13
+chrIII.trna25	tRNA-Pro-TGG-4-1
+chrIII.trna26	tRNA-Met-CAT-1-2
+chrIII.trna27	tRNA-Leu-CAA-1-2
+chrIII.trna28	tRNA-Lys-CTT-1-12
+chrIII.trna29	tRNA-Leu-CAA-1-3
+chrIII.trna3	tRX-Arg-NNN-7-1
+chrIII.trna30	tRNA-Ser-AGA-2-4
+chrIII.trna31	tRNA-Phe-GAA-2-2
+chrIII.trna32	tRNA-Pro-TGG-1-5
+chrIII.trna33	tRNA-Val-AAC-2-4
+chrIII.trna34	tRNA-Val-AAC-2-5
+chrIII.trna35	tRX-Ala-NNN-5-1
+chrIII.trna36	tRNA-Phe-GAA-2-4
+chrIII.trna37	tRNA-Thr-CGT-2-1
+chrIII.trna38	tRNA-Ser-GCT-3-1
+chrIII.trna39	tRNA-Tyr-GTA-2-3
+chrIII.trna4	tRX-Arg-NNN-6-1
+chrIII.trna40	tRX-Lys-NNN-7-5
+chrIII.trna41	tRX-Lys-NNN-7-6
+chrIII.trna42	tRNA-Thr-TGT-1-3
+chrIII.trna43	tRNA-Asn-GTT-1-4
+chrIII.trna44	tRNA-Thr-CGT-2-2
+chrIII.trna45	tRNA-Gln-TTG-1-3
+chrIII.trna46	tRNA-Pro-TGG-1-4
+chrIII.trna47	tRX-Arg-NNN-8-1
+chrIII.trna48	tRNA-Thr-AGT-1-4
+chrIII.trna49	tRNA-Ser-AGA-1-1
+chrIII.trna5	tRX-Ser-NNN-6-1
+chrIII.trna50	tRNA-Ser-CGA-1-2
+chrIII.trna51	tRNA-Asn-GTT-1-3
+chrIII.trna52	tRNA-Trp-CCA-1-2
+chrIII.trna53	tRNA-Phe-GAA-2-3
+chrIII.trna54	tRNA-Pro-CGG-1-1
+chrIII.trna55	tRNA-Phe-GAA-2-1
+chrIII.trna56	tRNA-Glu-CTC-2-1
+chrIII.trna57	tRNA-Thr-AGT-1-3
+chrIII.trna58	tRNA-Gly-TCC-1-12
+chrIII.trna59	tRNA-Lys-TTT-1-3
+chrIII.trna6	tRX-Ser-NNN-7-1
+chrIII.trna60	tRNA-Arg-CCT-2-1
+chrIII.trna61	tRNA-Lys-CTT-4-1
+chrIII.trna62	tRNA-Ser-CGA-2-1
+chrIII.trna63	tRX-Ser-NNN-4-1
+chrIII.trna64	tRNA-Ser-GCT-1-2
+chrIII.trna65	tRNA-Gly-GCC-1-6
+chrIII.trna66	tRNA-Gly-GCC-3-1
+chrIII.trna67	tRNA-iMet-CAT-1-6
+chrIII.trna68	tRNA-Arg-TCG-2-3
+chrIII.trna69	tRNA-Arg-ACG-1-3
+chrIII.trna7	tRNA-iMet-CAT-1-5
+chrIII.trna70	tRNA-Arg-ACG-1-2
+chrIII.trna71	tRNA-Ala-AGC-3-1
+chrIII.trna72	tRNA-Lys-CTT-1-11
+chrIII.trna73	tRX-Leu-NNN-6-1
+chrIII.trna74	tRNA-Glu-CTC-1-8
+chrIII.trna75	tRNA-Glu-CTC-1-6
+chrIII.trna76	tRX-Ser-NNN-5-1
+chrIII.trna77	tRX-Gln-NNN-2-1
+chrIII.trna78	tRX-Gln-NNN-3-1
+chrIII.trna79	tRNA-Ile-AAT-1-10
+chrIII.trna8	tRNA-Glu-CTC-1-7
+chrIII.trna80	tRNA-Ile-AAT-1-9
+chrIII.trna81	tRNA-Ile-AAT-1-8
+chrIII.trna9	tRNA-Pro-TGG-1-3
+chrIV.trna1	tRNA-Arg-CCT-1-1
+chrIV.trna10	tRNA-Asp-GTC-4-1
+chrIV.trna11	tRNA-Asp-GTC-5-1
+chrIV.trna12	tRNA-Arg-ACG-1-4
+chrIV.trna13	tRX-Lys-NNN-5-1
+chrIV.trna14	tRNA-His-GTG-5-1
+chrIV.trna15	tRNA-Lys-TTT-1-4
+chrIV.trna16	tRNA-Gln-CTG-2-1
+chrIV.trna17	tRX-Lys-NNN-8-4
+chrIV.trna18	tRNA-Lys-CTT-1-13
+chrIV.trna19	tRX-Val-NNN-1-1
+chrIV.trna2	tRNA-Val-CAC-2-1
+chrIV.trna20	tRNA-Val-CAC-1-1
+chrIV.trna21	tRNA-Leu-CAG-1-1
+chrIV.trna22	tRNA-Ala-AGC-2-1
+chrIV.trna23	tRNA-Gln-TTG-1-4
+chrIV.trna24	tRNA-Pro-AGG-4-3
+chrIV.trna25	tRNA-His-GTG-1-1
+chrIV.trna26	tRNA-Lys-CTT-1-14
+chrIV.trna27	tRX-Lys-NNN-8-5
+chrIV.trna28	tRX-His-NNN-2-1
+chrIV.trna29	tRNA-Pro-TGG-1-6
+chrIV.trna3	tRNA-SeC-TCA-1-1
+chrIV.trna30	tRNA-His-GTG-4-1
+chrIV.trna31	tRX-Und-NNN-2-1
+chrIV.trna32	tRNA-Val-AAC-3-1
+chrIV.trna33	tRNA-Trp-CCA-1-6
+chrIV.trna34	tRNA-Lys-CTT-1-15
+chrIV.trna35	tRNA-Asp-GTC-2-7
+chrIV.trna36	tRNA-Glu-TTC-1-6
+chrIV.trna37	tRNA-His-GTG-2-2
+chrIV.trna38	tRNA-Ala-AGC-1-6
+chrIV.trna39	tRNA-Ala-AGC-1-7
+chrIV.trna4	tRNA-Asp-GTC-2-3
+chrIV.trna40	tRNA-Val-AAC-2-7
+chrIV.trna41	tRNA-His-GTG-2-3
+chrIV.trna42	tRNA-Ser-TGA-6-1
+chrIV.trna43	tRNA-Gly-TCC-1-16
+chrIV.trna44	tRNA-Gly-TCC-1-17
+chrIV.trna45	tRNA-Gly-TCC-1-18
+chrIV.trna46	tRNA-Gly-TCC-6-1
+chrIV.trna47	tRNA-Gly-TCC-1-15
+chrIV.trna48	tRNA-Ser-TGA-6-2
+chrIV.trna49	tRNA-Ala-AGC-1-5
+chrIV.trna5	tRNA-Glu-TTC-1-3
+chrIV.trna50	tRNA-Val-AAC-2-6
+chrIV.trna51	tRNA-Glu-TTC-1-5
+chrIV.trna52	tRNA-Asp-GTC-2-6
+chrIV.trna53	tRNA-Ala-TGC-1-5
+chrIV.trna54	tRNA-Ser-AGA-2-6
+chrIV.trna55	tRNA-Ser-AGA-2-5
+chrIV.trna56	tRNA-His-GTG-3-2
+chrIV.trna57	tRNA-His-GTG-3-1
+chrIV.trna58	tRNA-Arg-ACG-1-6
+chrIV.trna59	tRNA-Gly-TCC-1-14
+chrIV.trna6	tRX-Arg-NNN-9-1
+chrIV.trna60	tRNA-Ala-TGC-1-4
+chrIV.trna61	tRX-Lys-NNN-8-6
+chrIV.trna62	tRNA-Arg-ACG-1-5
+chrIV.trna63	tRNA-Gln-TTG-1-6
+chrIV.trna64	tRNA-Gln-CTG-2-2
+chrIV.trna65	tRNA-Pro-CGG-1-3
+chrIV.trna66	tRNA-Leu-CAA-1-4
+chrIV.trna67	tRNA-Gln-TTG-1-5
+chrIV.trna68	tRX-Gln-NNN-1-1
+chrIV.trna69	tRNA-Thr-TGT-1-4
+chrIV.trna7	tRNA-Asp-GTC-2-4
+chrIV.trna70	tRNA-Trp-CCA-1-5
+chrIV.trna71	tRNA-Trp-CCA-1-4
+chrIV.trna72	tRX-Und-NNN-3-1
+chrIV.trna73	tRNA-Trp-CCA-1-3
+chrIV.trna74	tRX-Lys-NNN-5-2
+chrIV.trna75	tRNA-Pro-CGG-1-2
+chrIV.trna76	tRX-Lys-NNN-7-7
+chrIV.trna77	tRNA-Asp-GTC-2-5
+chrIV.trna78	tRNA-Glu-TTC-2-1
+chrIV.trna79	tRX-Asp-NNN-1-1
+chrIV.trna8	tRNA-Asp-GTC-1-1
+chrIV.trna80	tRNA-Glu-TTC-1-4
+chrIV.trna81	tRX-Und-NNN-6-1
+chrIV.trna82	tRNA-Asp-GTC-2-2
+chrIV.trna9	tRNA-Asp-GTC-3-1
+chrV.trna1	tRNA-Ala-AGC-6-1
+chrV.trna10	tRNA-Arg-TCT-2-3
+chrV.trna100	tRNA-Leu-TAG-1-2
+chrV.trna101	tRNA-Met-CAT-1-4
+chrV.trna102	tRNA-Thr-CGT-5-1
+chrV.trna103	tRNA-Glu-TTC-3-1
+chrV.trna104	tRNA-Ser-GCT-1-3
+chrV.trna105	tRX-Lys-NNN-4-2
+chrV.trna106	tRNA-Gln-TTG-1-7
+chrV.trna107	tRX-Lys-NNN-6-1
+chrV.trna108	tRNA-Pro-TGG-5-1
+chrV.trna109	tRNA-Pro-TGG-6-1
+chrV.trna11	tRNA-Tyr-GTA-1-1
+chrV.trna110	tRNA-Met-CAT-1-3
+chrV.trna111	tRNA-Thr-AGT-1-5
+chrV.trna112	tRX-Und-NNN-9-1
+chrV.trna12	tRNA-Lys-TTT-1-5
+chrV.trna13	tRNA-Ala-CGC-4-1
+chrV.trna14	tRNA-Ala-CGC-3-1
+chrV.trna15	tRNA-Ile-TAT-2-2
+chrV.trna16	tRNA-Pro-TGG-1-10
+chrV.trna17	tRNA-Gln-CTG-1-1
+chrV.trna18	tRNA-Tyr-GTA-2-4
+chrV.trna19	tRNA-Asn-GTT-1-6
+chrV.trna2	tRNA-Thr-AGT-1-6
+chrV.trna20	tRNA-Lys-TTT-1-8
+chrV.trna21	tRNA-Tyr-GTA-1-2
+chrV.trna22	tRNA-Met-CAT-2-1
+chrV.trna23	tRNA-Ser-TGA-7-1
+chrV.trna24	tRNA-His-GTG-3-3
+chrV.trna25	tRNA-Thr-CGT-3-1
+chrV.trna26	tRNA-Asn-GTT-1-8
+chrV.trna27	tRNA-Asn-GTT-1-10
+chrV.trna28	tRX-Lys-NNN-8-7
+chrV.trna29	tRNA-Asp-GTC-2-9
+chrV.trna3	tRNA-Pro-TGG-1-7
+chrV.trna30	tRX-His-NNN-3-1
+chrV.trna31	tRX-Gly-NNN-8-1
+chrV.trna32	tRX-Gly-NNN-7-1
+chrV.trna33	tRX-Gly-NNN-6-1
+chrV.trna34	tRX-Ser-NNN-9-1
+chrV.trna35	tRX-Und-NNN-8-1
+chrV.trna36	tRX-Pro-NNN-10-1
+chrV.trna37	tRX-Pro-NNN-8-1
+chrV.trna38	tRNA-Phe-GAA-3-1
+chrV.trna39	tRNA-Glu-TTC-1-7
+chrV.trna4	tRNA-Pro-TGG-1-8
+chrV.trna40	tRX-His-NNN-8-1
+chrV.trna41	tRX-His-NNN-4-1
+chrV.trna42	tRX-His-NNN-6-1
+chrV.trna43	tRNA-Asn-GTT-1-11
+chrV.trna44	tRX-Ser-NNN-11-1
+chrV.trna45	tRX-Ser-NNN-8-1
+chrV.trna46	tRNA-Cys-GCA-1-5
+chrV.trna47	tRNA-Asn-GTT-1-13
+chrV.trna48	tRNA-Asn-GTT-1-12
+chrV.trna49	tRX-Ser-NNN-12-1
+chrV.trna5	tRNA-Gly-GCC-2-1
+chrV.trna50	tRX-Ser-NNN-10-1
+chrV.trna51	tRX-Gln-NNN-4-1
+chrV.trna52	tRX-Gly-NNN-5-1
+chrV.trna53	tRX-His-NNN-7-1
+chrV.trna54	tRX-Pro-NNN-5-1
+chrV.trna55	tRX-His-NNN-5-1
+chrV.trna56	tRX-Ala-NNN-7-1
+chrV.trna57	tRX-His-NNN-9-1
+chrV.trna58	tRX-Thr-NNN-6-1
+chrV.trna59	tRX-Thr-NNN-7-1
+chrV.trna6	tRNA-Cys-GCA-2-1
+chrV.trna60	tRX-Gly-NNN-9-1
+chrV.trna61	tRX-Gly-NNN-4-1
+chrV.trna62	tRNA-Thr-TGT-1-5
+chrV.trna63	tRX-Pro-NNN-6-1
+chrV.trna64	tRX-Und-NNN-4-1
+chrV.trna65	tRX-Cys-NNN-1-1
+chrV.trna66	tRX-Leu-NNN-7-1
+chrV.trna67	tRX-Und-NNN-7-1
+chrV.trna68	tRX-Val-NNN-2-1
+chrV.trna69	tRNA-Tyr-GTA-2-5
+chrV.trna7	tRX-Lys-NNN-4-1
+chrV.trna70	tRNA-Tyr-GTA-3-1
+chrV.trna71	tRNA-Asp-GTC-2-11
+chrV.trna72	tRNA-Asp-GTC-2-10
+chrV.trna73	tRNA-Lys-TTT-1-9
+chrV.trna74	tRNA-Gln-CTG-2-3
+chrV.trna75	tRX-Lys-NNN-8-8
+chrV.trna76	tRNA-Asn-GTT-1-9
+chrV.trna77	tRNA-Asn-GTT-1-7
+chrV.trna78	tRNA-Asp-GTC-2-8
+chrV.trna79	tRNA-Ser-TGA-5-1
+chrV.trna8	tRNA-Cys-GCA-1-3
+chrV.trna80	tRNA-Val-CAC-1-3
+chrV.trna81	tRNA-Gly-GCC-1-7
+chrV.trna82	tRNA-Ala-CGC-2-1
+chrV.trna83	tRNA-Pro-TGG-1-11
+chrV.trna84	tRNA-Val-AAC-2-8
+chrV.trna85	tRNA-Phe-GAA-2-5
+chrV.trna86	tRNA-Cys-GCA-1-4
+chrV.trna87	tRNA-Pro-TGG-1-9
+chrV.trna88	tRNA-Lys-TTT-1-7
+chrV.trna89	tRNA-Ala-AGC-1-8
+chrV.trna9	tRNA-Ile-TAT-2-1
+chrV.trna90	tRNA-Ser-TGA-2-1
+chrV.trna91	tRNA-Val-TAC-1-1
+chrV.trna92	tRNA-Asn-GTT-1-5
+chrV.trna93	tRNA-Val-CAC-1-2
+chrV.trna94	tRX-Leu-NNN-3-1
+chrV.trna95	tRNA-Leu-CAG-2-2
+chrV.trna96	tRNA-Tyr-GTA-6-1
+chrV.trna97	tRNA-Thr-AGT-1-8
+chrV.trna98	tRNA-Lys-TTT-1-6
+chrV.trna99	tRNA-Thr-AGT-1-7
+chrX.trna1	tRX-Glu-NNN-1-1
+chrX.trna10	tRNA-Arg-TCG-1-1
+chrX.trna100	tRNA-Leu-AAG-3-9
+chrX.trna101	tRNA-Ser-AGA-2-11
+chrX.trna102	tRNA-Thr-AGT-1-13
+chrX.trna103	tRNA-Thr-AGT-1-15
+chrX.trna104	tRNA-Val-TAC-3-2
+chrX.trna105	tRNA-Pro-TGG-1-18
+chrX.trna106	tRNA-Ile-AAT-1-18
+chrX.trna107	tRNA-Ser-GCT-2-1
+chrX.trna108	tRNA-Glu-CTC-1-14
+chrX.trna109	tRNA-Thr-TGT-1-9
+chrX.trna11	tRX-Phe-NNN-3-1
+chrX.trna110	tRNA-Leu-CAA-1-6
+chrX.trna111	tRNA-Lys-CTT-1-18
+chrX.trna112	tRNA-Lys-CTT-5-1
+chrX.trna113	tRNA-Lys-CTT-1-19
+chrX.trna114	tRNA-Lys-CTT-3-1
+chrX.trna115	tRNA-Lys-CTT-1-20
+chrX.trna116	tRNA-Lys-CTT-1-21
+chrX.trna117	tRNA-Lys-CTT-1-22
+chrX.trna118	tRNA-Lys-CTT-1-23
+chrX.trna119	tRX-Gly-NNN-2-1
+chrX.trna12	tRX-Thr-NNN-2-1
+chrX.trna120	tRNA-Glu-CTC-1-15
+chrX.trna121	tRX-Lys-NNN-7-12
+chrX.trna122	tRNA-Arg-CCT-1-2
+chrX.trna123	tRNA-His-GTG-2-5
+chrX.trna124	tRNA-His-GTG-2-7
+chrX.trna125	tRNA-His-GTG-2-9
+chrX.trna126	tRNA-Ser-AGA-1-2
+chrX.trna127	tRNA-Pro-TGG-1-21
+chrX.trna128	tRNA-Ile-AAT-1-19
+chrX.trna129	tRNA-Cys-GCA-1-12
+chrX.trna13	tRX-Arg-NNN-5-1
+chrX.trna130	tRNA-Gly-TCC-1-29
+chrX.trna131	tRNA-Val-AAC-2-12
+chrX.trna132	tRX-Thr-NNN-3-1
+chrX.trna133	tRNA-Ile-AAT-1-20
+chrX.trna134	tRX-Ala-NNN-6-1
+chrX.trna135	tRNA-Leu-CAG-1-2
+chrX.trna136	tRNA-Pro-TGG-8-1
+chrX.trna137	tRNA-Pro-TGG-1-22
+chrX.trna138	tRNA-Ser-AGA-3-1
+chrX.trna139	tRNA-Pro-TGG-1-24
+chrX.trna14	tRNA-Glu-TTC-1-8
+chrX.trna140	tRNA-Glu-CTC-4-1
+chrX.trna141	tRNA-Glu-CTC-5-1
+chrX.trna142	tRNA-Val-AAC-1-1
+chrX.trna143	tRNA-Val-AAC-1-2
+chrX.trna144	tRNA-Val-AAC-1-3
+chrX.trna145	tRNA-Val-AAC-1-4
+chrX.trna146	tRNA-Glu-CTC-1-19
+chrX.trna147	tRNA-iMet-CAT-1-9
+chrX.trna148	tRNA-Arg-TCG-4-1
+chrX.trna149	tRNA-Phe-GAA-7-1
+chrX.trna15	tRX-Leu-NNN-4-1
+chrX.trna150	tRNA-Phe-GAA-4-3
+chrX.trna151	tRNA-Phe-GAA-4-4
+chrX.trna152	tRNA-Phe-GAA-4-5
+chrX.trna153	tRNA-Glu-CTC-1-20
+chrX.trna154	tRNA-Val-CAC-1-4
+chrX.trna155	tRNA-Val-AAC-4-1
+chrX.trna156	tRNA-Val-AAC-3-2
+chrX.trna157	tRNA-Gly-GCC-1-11
+chrX.trna158	tRNA-Ser-GCT-1-7
+chrX.trna159	tRNA-His-GTG-2-11
+chrX.trna16	tRNA-Thr-TGT-2-1
+chrX.trna160	tRNA-Asp-GTC-2-21
+chrX.trna161	tRNA-Asp-GTC-2-20
+chrX.trna162	tRNA-Asp-GTC-6-1
+chrX.trna163	tRNA-Asp-GTC-2-19
+chrX.trna164	tRNA-Val-CAC-1-5
+chrX.trna165	tRNA-Phe-GAA-4-2
+chrX.trna166	tRNA-Glu-CTC-1-18
+chrX.trna167	tRNA-Glu-CTC-1-17
+chrX.trna168	tRNA-Glu-CTC-1-16
+chrX.trna169	tRNA-Lys-TTT-1-14
+chrX.trna17	tRX-Lys-NNN-8-9
+chrX.trna170	tRNA-Tyr-GTA-2-12
+chrX.trna171	tRNA-Tyr-GTA-2-11
+chrX.trna172	tRNA-Tyr-GTA-2-10
+chrX.trna173	tRNA-Tyr-GTA-2-9
+chrX.trna174	tRNA-Ser-TGA-2-2
+chrX.trna175	tRNA-Pro-TGG-1-23
+chrX.trna176	tRNA-Ser-CGA-2-2
+chrX.trna177	tRNA-Ser-AGA-4-1
+chrX.trna178	tRX-Pro-NNN-3-1
+chrX.trna179	tRX-Pro-NNN-1-1
+chrX.trna18	tRNA-Thr-AGT-1-9
+chrX.trna180	tRNA-Lys-CTT-1-25
+chrX.trna181	tRNA-Gly-TCC-1-28
+chrX.trna182	tRNA-Arg-TCT-3-2
+chrX.trna183	tRNA-Lys-CTT-6-1
+chrX.trna184	tRNA-Lys-CTT-1-24
+chrX.trna185	tRNA-Pro-TGG-1-20
+chrX.trna186	tRNA-Trp-CCA-2-1
+chrX.trna187	tRNA-Asp-GTC-2-18
+chrX.trna188	tRNA-His-GTG-2-10
+chrX.trna189	tRNA-His-GTG-2-8
+chrX.trna19	tRNA-Ile-AAT-2-1
+chrX.trna190	tRNA-His-GTG-2-6
+chrX.trna191	tRNA-Lys-TTT-1-13
+chrX.trna192	tRX-Lys-NNN-7-13
+chrX.trna193	tRX-Gly-NNN-3-1
+chrX.trna194	tRNA-Lys-CTT-7-1
+chrX.trna195	tRNA-Lys-CTT-1-17
+chrX.trna196	tRNA-Pro-TGG-1-19
+chrX.trna197	tRNA-Ser-GCT-1-6
+chrX.trna198	tRNA-Leu-CAA-2-1
+chrX.trna199	tRNA-Ile-AAT-1-17
+chrX.trna2	tRX-Lys-NNN-7-8
+chrX.trna20	tRNA-Asp-GTC-2-14
+chrX.trna200	tRNA-Tyr-GTA-5-1
+chrX.trna201	tRNA-Thr-AGT-1-14
+chrX.trna202	tRNA-Tyr-GTA-2-8
+chrX.trna203	tRNA-Gly-GCC-1-10
+chrX.trna204	tRNA-Ser-CGA-1-3
+chrX.trna205	tRNA-Leu-CAG-2-3
+chrX.trna206	tRNA-Ala-CGC-1-1
+chrX.trna207	tRNA-Pro-TGG-3-1
+chrX.trna208	tRNA-Ala-AGC-1-17
+chrX.trna209	tRNA-Glu-TTC-1-15
+chrX.trna21	tRNA-Gly-GCC-1-8
+chrX.trna210	tRNA-Leu-CAA-1-5
+chrX.trna211	tRNA-Arg-TCG-2-4
+chrX.trna212	tRNA-Lys-CTT-1-16
+chrX.trna213	tRNA-His-GTG-2-4
+chrX.trna214	tRNA-Thr-CGT-4-1
+chrX.trna215	tRNA-Gln-TTG-1-14
+chrX.trna216	tRX-Arg-NNN-3-1
+chrX.trna217	tRNA-Leu-TAA-1-2
+chrX.trna218	tRNA-Arg-ACG-3-10
+chrX.trna219	tRNA-Leu-AAG-3-8
+chrX.trna22	tRNA-Gly-TCC-1-20
+chrX.trna220	tRNA-Leu-AAG-3-7
+chrX.trna221	tRNA-Glu-TTC-1-14
+chrX.trna222	tRNA-Arg-ACG-3-9
+chrX.trna223	tRNA-Glu-TTC-1-12
+chrX.trna224	tRNA-Arg-ACG-3-8
+chrX.trna225	tRNA-Arg-ACG-3-6
+chrX.trna226	tRNA-Arg-ACG-2-1
+chrX.trna227	tRNA-Ile-TAT-1-4
+chrX.trna228	tRNA-Ala-AGC-1-15
+chrX.trna229	tRNA-Ala-AGC-1-14
+chrX.trna23	tRNA-Met-CAT-1-5
+chrX.trna230	tRNA-Val-AAC-2-10
+chrX.trna231	tRNA-Pro-TGG-1-17
+chrX.trna232	tRNA-iMet-CAT-1-8
+chrX.trna233	tRNA-Gln-TTG-1-13
+chrX.trna234	tRNA-Gln-TTG-1-12
+chrX.trna235	tRNA-Gln-TTG-1-11
+chrX.trna236	tRNA-Gln-TTG-1-10
+chrX.trna237	tRNA-Gln-TTG-5-1
+chrX.trna238	tRNA-Pro-AGG-5-1
+chrX.trna239	tRNA-Thr-CGT-1-1
+chrX.trna24	tRNA-Pro-TGG-1-12
+chrX.trna240	tRNA-Thr-TGT-1-7
+chrX.trna241	tRNA-Pro-TGG-1-15
+chrX.trna242	tRNA-Leu-AAG-3-6
+chrX.trna243	tRNA-Trp-CCA-1-10
+chrX.trna244	tRNA-Trp-CCA-1-9
+chrX.trna245	tRNA-Gly-TCC-3-1
+chrX.trna246	tRNA-Gly-TCC-1-26
+chrX.trna247	tRNA-Gly-TCC-1-24
+chrX.trna248	tRNA-Gly-TCC-1-23
+chrX.trna249	tRNA-Cys-GCA-1-11
+chrX.trna25	tRNA-Pro-AGG-1-1
+chrX.trna250	tRNA-Gly-GCC-1-9
+chrX.trna251	tRNA-Val-AAC-2-9
+chrX.trna252	tRNA-Arg-ACG-3-4
+chrX.trna253	tRNA-Arg-ACG-4-1
+chrX.trna254	tRNA-Cys-GCA-1-9
+chrX.trna255	tRNA-Arg-ACG-3-3
+chrX.trna256	tRNA-Cys-GCA-1-7
+chrX.trna257	tRNA-Cys-GCA-1-6
+chrX.trna258	tRNA-Gln-CTG-2-4
+chrX.trna259	tRX-Lys-NNN-8-11
+chrX.trna26	tRNA-Pro-AGG-2-1
+chrX.trna260	tRNA-Leu-AAG-3-4
+chrX.trna261	tRNA-Leu-AAG-3-3
+chrX.trna262	tRNA-Leu-AAG-6-1
+chrX.trna263	tRNA-Arg-TCT-3-1
+chrX.trna264	tRNA-Ile-AAT-1-16
+chrX.trna265	tRNA-Ser-AGA-2-7
+chrX.trna266	tRNA-Asp-GTC-2-16
+chrX.trna267	tRNA-Arg-ACG-3-2
+chrX.trna268	tRNA-Glu-CTC-1-13
+chrX.trna269	tRNA-Gly-TCC-1-21
+chrX.trna27	tRNA-Gly-TCC-7-1
+chrX.trna270	tRNA-Asn-GTT-1-16
+chrX.trna271	tRNA-Ala-AGC-1-11
+chrX.trna272	tRNA-Ala-AGC-1-10
+chrX.trna273	tRNA-Thr-AGT-1-12
+chrX.trna274	tRNA-Leu-AAG-3-2
+chrX.trna275	tRX-Lys-NNN-6-3
+chrX.trna276	tRNA-Ala-TGC-1-7
+chrX.trna277	tRNA-Arg-ACG-3-1
+chrX.trna278	tRNA-Pro-TGG-1-13
+chrX.trna279	tRNA-Lys-TTT-1-11
+chrX.trna28	tRX-Ile-NNN-1-1
+chrX.trna280	tRNA-Met-CAT-1-6
+chrX.trna281	tRNA-Phe-GAA-5-1
+chrX.trna282	tRX-Lys-NNN-7-11
+chrX.trna283	tRNA-Ile-AAT-1-15
+chrX.trna284	tRNA-His-GTG-3-4
+chrX.trna285	tRNA-Val-TAC-2-1
+chrX.trna286	tRNA-Thr-AGT-1-10
+chrX.trna287	tRNA-Glu-CTC-1-9
+chrX.trna288	tRNA-Asn-GTT-1-14
+chrX.trna289	tRNA-Ile-AAT-1-14
+chrX.trna29	tRNA-Glu-CTC-1-10
+chrX.trna290	tRX-Lys-NNN-8-10
+chrX.trna291	tRNA-Asp-GTC-2-13
+chrX.trna292	tRNA-Thr-TGT-2-2
+chrX.trna293	tRX-Tyr-NNN-2-1
+chrX.trna294	tRNA-Pro-CGG-1-4
+chrX.trna295	tRNA-Arg-CCT-3-1
+chrX.trna296	tRX-Ser-NNN-2-1
+chrX.trna297	tRX-Arg-NNN-2-1
+chrX.trna298	tRNA-Ile-AAT-1-13
+chrX.trna299	tRNA-Ile-AAT-1-12
+chrX.trna3	tRNA-Gln-TTG-1-8
+chrX.trna30	tRNA-Glu-CTC-1-11
+chrX.trna300	tRNA-Ile-AAT-1-11
+chrX.trna301	tRX-Und-NNN-5-1
+chrX.trna302	tRNA-Gly-TCC-1-19
+chrX.trna303	tRNA-Arg-TCG-3-1
+chrX.trna304	tRNA-Tyr-GTA-2-6
+chrX.trna305	tRNA-Asp-GTC-2-12
+chrX.trna306	tRNA-Leu-AAG-3-1
+chrX.trna307	tRX-Lys-NNN-7-9
+chrX.trna31	tRNA-Glu-TTC-1-9
+chrX.trna32	tRNA-Thr-AGT-1-11
+chrX.trna33	tRNA-Lys-TTT-1-10
+chrX.trna34	tRX-Lys-NNN-7-10
+chrX.trna35	tRNA-Met-CAT-1-7
+chrX.trna36	tRNA-Met-CAT-1-8
+chrX.trna37	tRNA-Met-CAT-1-9
+chrX.trna38	tRNA-Ser-GCT-1-4
+chrX.trna39	tRNA-Ser-GCT-1-5
+chrX.trna4	tRNA-Thr-TGT-1-6
+chrX.trna40	tRNA-Lys-TTT-1-12
+chrX.trna41	tRNA-Pro-TGG-1-14
+chrX.trna42	tRNA-Ala-TGC-1-6
+chrX.trna43	tRNA-Trp-CCA-1-7
+chrX.trna44	tRNA-Phe-GAA-4-1
+chrX.trna45	tRX-Lys-NNN-6-2
+chrX.trna46	tRNA-Ala-AGC-1-9
+chrX.trna47	tRNA-Glu-CTC-1-12
+chrX.trna48	tRNA-Asn-GTT-2-1
+chrX.trna49	tRNA-Asn-GTT-1-15
+chrX.trna5	tRX-Arg-NNN-1-1
+chrX.trna50	tRNA-Gly-TCC-1-22
+chrX.trna51	tRNA-Glu-CTC-3-1
+chrX.trna52	tRNA-Pro-AGG-3-1
+chrX.trna53	tRX-Ser-NNN-3-1
+chrX.trna54	tRNA-Asp-GTC-2-15
+chrX.trna55	tRNA-Ser-AGA-2-8
+chrX.trna56	tRNA-Asp-GTC-2-17
+chrX.trna57	tRNA-Ser-AGA-2-9
+chrX.trna58	tRNA-Asp-GTC-7-1
+chrX.trna59	tRNA-iMet-CAT-1-7
+chrX.trna6	tRNA-Arg-TCG-3-2
+chrX.trna60	tRNA-Arg-TCT-2-4
+chrX.trna61	tRNA-Arg-TCT-2-5
+chrX.trna62	tRNA-Asn-GTT-1-17
+chrX.trna63	tRNA-Gln-TTG-1-9
+chrX.trna64	tRNA-Arg-ACG-5-1
+chrX.trna65	tRNA-Cys-GCA-1-8
+chrX.trna66	tRNA-Cys-GCA-1-10
+chrX.trna67	tRNA-Glu-TTC-1-10
+chrX.trna68	tRNA-Gly-TCC-4-1
+chrX.trna69	tRNA-Gly-TCC-1-25
+chrX.trna7	tRX-Asp-NNN-2-1
+chrX.trna70	tRNA-Glu-TTC-1-11
+chrX.trna71	tRNA-Gly-TCC-2-1
+chrX.trna72	tRNA-Trp-CCA-1-8
+chrX.trna73	tRNA-Gln-TTG-4-1
+chrX.trna74	tRNA-Leu-AAG-3-5
+chrX.trna75	tRNA-Pro-TGG-1-16
+chrX.trna76	tRNA-Ser-AGA-2-10
+chrX.trna77	tRNA-Gln-CTG-2-5
+chrX.trna78	tRNA-Gln-TTG-3-1
+chrX.trna79	tRNA-Ala-AGC-1-12
+chrX.trna8	tRX-Asp-NNN-3-1
+chrX.trna80	tRNA-Ala-AGC-1-13
+chrX.trna81	tRNA-Ala-TGC-1-8
+chrX.trna82	tRNA-Ala-AGC-1-16
+chrX.trna83	tRNA-Ser-TGA-1-1
+chrX.trna84	tRNA-Arg-ACG-3-5
+chrX.trna85	tRNA-Arg-ACG-3-7
+chrX.trna86	tRNA-Glu-TTC-1-13
+chrX.trna87	tRNA-Gly-TCC-1-27
+chrX.trna88	tRNA-Leu-TAG-1-3
+chrX.trna89	tRNA-Asn-GTT-1-18
+chrX.trna9	tRX-Ser-NNN-2-2
+chrX.trna90	tRNA-Gln-CTG-3-1
+chrX.trna91	tRNA-Thr-CGT-6-1
+chrX.trna92	tRX-Lys-NNN-6-4
+chrX.trna93	tRNA-Thr-TGT-1-8
+chrX.trna94	tRNA-Ile-TAT-2-3
+chrX.trna95	tRNA-Tyr-GTA-2-7
+chrX.trna96	tRNA-Val-AAC-2-11
+chrX.trna97	tRNA-Ser-TGA-4-1
+chrX.trna98	tRNA-Gln-TTG-1-15
+chrX.trna99	tRNA-Gln-TTG-1-16

mimseq/data/ce11-eColitK/FastaHeadersforMimseq.py

+#! /usr/bin/env python3
+
+import sys
+from collections import defaultdict
+
+name_map = sys.argv[1]
+out_file = sys.argv[2]
+in_fa = sys.argv[3]
+out_fa = sys.argv[4] 
+
+name_dict = defaultdict()
+
+with open(name_map, "r") as names:
+	for line in names:
+		if not line.startswith("tRNAscan"):
+			line = line.strip()
+			name = line.split("\t")[1]
+			name_dict[name] = line.split("\t")[0]
+
+score_dict = defaultdict(list)
+
+with open(out_file, "r") as scores:
+	for line in scores:
+		line = line.strip()
+		if line.startswith("chr"):
+			name = line.split("\t")[0].strip() + ".trna" + line.split("\t")[1]
+			anticodon = line.split("\t")[5]
+			score_dict[name].append(line.split("\t")[8])
+			score_dict[name].append(anticodon)
+
+with open(in_fa, "r") as fasta, open(out_fa, "w") as output:
+	for line in fasta:
+		line = line.strip()
+		if line.startswith(">"):
+			scan_id = name_dict[line.split(":")[0].replace(">","")]
+			name = "Caenorhabditis_elegans_" + line.split(":")[0].replace(">","")
+			if ("NNN" in name): #and not ("Und" or "Undet" in name):
+				anticodon = score_dict[scan_id][1]
+				name = "-".join(name.split("-")[0:2]) + "-" + anticodon + "-" + "-".join(name.split("-")[3:])
+			else:
+				anticodon = score_dict[scan_id][1]
+			pos = line.split(":")[2:]
+			start = int(pos[1].split("-")[0])
+			stop = int(pos[1].split("-")[1].split("(")[0])
+			length = str(stop - start)
+			output.write(">" + name + " (tRNAscan-SE ID: " + scan_id + ") " + name.split("-")[1] + \
+				" (" + anticodon + ") " + length + " bp Sc: " + score_dict[scan_id][0] + " " + ":".join(pos) + "\n")
+		else:
+			output.write(line + "\n")

mimseq/data/ce11-eColitK/README.txt

+# Generate fasta file of full tRNA set using bed file and custom script to adjust tRNA naming in final fasta
+
+# Extract sequences
+bedtools getfasta -fi /data/genome_data/Caenorhabditis_elegans_ce11/ce11.fa -fo ce11-tRNAs-all.tmp.fa -bed ce11-tRNAs.bed -name -s -fullHeader
+
+# Adjust header naming convention for mimseq using hg38-tRNAs_name_map.txt
+./FastaHeadersforMimseq.py ce11-tRNAs_name_map.txt ce11-tRNAs-detailed.out ce11-tRNAs-all.tmp.fa ce11-tRNAs-all.fa
+
+# Add E. coli Lys-TTT reference sequence to the top of ce11-tRNAs-all.fa
+
+###### NB ######
+Some tRNAs incorrectly named!
+
+
+### Manually removed sequences due to strange sequence, poor score and issues with infernal alignment with mimseq
+### See ce11-tRNAs-filtered.fa
+
+
+#### mitochondrial Tyr-GTA missing a 3'-A which leads to inaccuracies in alignment and shows as mostly CCA-less reads in CCA plots ####
+#### Gene should end on CCA and gain an additional CCA after processing
+#### manually added this A
+#### see https://www.nature.com/articles/s41467-020-18068-6#Sec24 (supplementary data 4)

mimseq.egg-info/entry_points.txt

 [console_scripts]
 mimseq = mimseq.mimseq:main
-

mimseq.egg-info/PKG-INFO

 Metadata-Version: 2.1
 Name: mimseq
-Version: 1.3.3
+Version: 1.3.4
 Summary: Custom high-throughput tRNA sequencing alignment and quantification pipeline based on modification induced misincorporation cDNA synthesis.
@@ -9,3 +9,2 @@ Home-page: https://github.com/nedialkova-lab/mim-tRNAseq
 License: GPLv3
-Platform: UNKNOWN
 Classifier: Development Status :: 4 - Beta
@@ -19,4 +18,1 @@ Classifier: Environment :: Console
 License-File: LICENSE.txt
-
-UNKNOWN
-

mimseq.egg-info/SOURCES.txt

@@ -52,7 +52,10 @@ LICENSE.txt
 mimseq/data/araTha1-eColitK/hg38README.txt
-mimseq/data/ce11-tRNAs/ce11-mitotRNAs.fa
-mimseq/data/ce11-tRNAs/ce11-tRNAs-detailed.out
-mimseq/data/ce11-tRNAs/ce11-tRNAs.bed
-mimseq/data/ce11-tRNAs/ce11-tRNAs.fa
-mimseq/data/ce11-tRNAs/ce11-tRNAs_name_map.txt
+mimseq/data/ce11-eColitK/FastaHeadersforMimseq.py
+mimseq/data/ce11-eColitK/README.txt
+mimseq/data/ce11-eColitK/ce11-mitotRNAs.fa
+mimseq/data/ce11-eColitK/ce11-tRNAs-all.fa
+mimseq/data/ce11-eColitK/ce11-tRNAs-all.tmp.fa
+mimseq/data/ce11-eColitK/ce11-tRNAs-detailed.out
+mimseq/data/ce11-eColitK/ce11-tRNAs.bed
+mimseq/data/ce11-eColitK/ce11-tRNAs_name_map.txt
 mimseq/data/danRer11-eColitK/README.txt
@@ -59,0 +62,0 @@ mimseq/data/danRer11-eColitK/danRer11-mitotRNAs.fa

mimseq/data/additionalMods.txt

@@ -48,2 +48,10 @@ Homo sapiens	Ala-AGC	I34
 Rattus norvegicus	Thr-AGT	I34
-Rattus norvegicus	Val-AAC	I34
+Rattus norvegicus	Val-AAC	I34
+Caenorhabditis elegans	Ala-AGC	I34
+Caenorhabditis elegans	Arg-ACG	I34
+Caenorhabditis elegans	Ile-AAT	I34
+Caenorhabditis elegans	Leu-AAG	I34
+Caenorhabditis elegans	Pro-AGG	I34
+Caenorhabditis elegans	Ser-AGA	I34
+Caenorhabditis elegans	Thr-AGT	I34
+Caenorhabditis elegans	Val-AAC	I34

mimseq/mimseq.py

@@ -236,4 +236,4 @@ #! /usr/bin/env python3
 	inputs.add_argument('-s','--species', metavar='species', required = not ('-t' in sys.argv or '--trnas' in sys.argv), dest = 'species', help = \
-		'Species being analyzed for which to load pre-packaged data files (prioritized over -t, -o and -m). Options are: Hsap, Hsap19, Mmus, Rnor, Scer, Spom, Dmel, Drer, Ecol, Atha', \
-		choices = ['Hsap', 'Hsap19','Ggor','Mmus','Rnor','Scer', 'Spom','Dmel', 'Drer', 'Ecol', 'Atha', 'HsapTCC', 'ScerMut'])
+		'Species being analyzed for which to load pre-packaged data files (prioritized over -t, -o and -m). Options are: Hsap, Hsap19, Mmus, Rnor, Scer, Spom, Dmel, Drer, Cele, Ecol, Atha', \
+		choices = ['Hsap', 'Hsap19','Ggor','Mmus','Rnor','Scer', 'Spom','Dmel', 'Drer', 'Cele', 'Ecol', 'Atha', 'HsapTCC', 'ScerMut'])
 	inputs.add_argument('-t', '--trnas', metavar='genomic tRNAs', required = False, dest = 'trnas', help = \
@@ -416,2 +416,6 @@ 'Genomic tRNA fasta file, e.g. from gtRNAdb or tRNAscan-SE. Already avalable in data folder for a few model organisms.')
 					args.plastid = os.path.dirname(os.path.realpath(__file__)) + "/data/araTha1-eColitK/araTha1-plastidtRNAs.fa"
+				if args.species == 'Cele':
+					args.trnas = os.path.dirname(os.path.realpath(__file__)) + "/data/ce11-eColitK/ce11-tRNAs-all.fa"
+					args.trnaout = os.path.dirname(os.path.realpath(__file__)) + "/data/ce11-eColitK/ce11-tRNAs-detailed.out"
+					args.mito = os.path.dirname(os.path.realpath(__file__)) + "/data/ce11-eColitK/ce11-mitotRNAs.fa"
 			else:
@@ -418,0 +422,0 @@ args.species = args.trnas.split("/")[-1].split(".")[0]

mimseq/modPlot.R

@@ -340,5 +340,5 @@ #!/usr/bin/Rscript
     group_by(isodecoder, canon_pos, bam, identity) %>%
-    filter((any(max(new_prop) > 0.95) &
+    filter((any(max(new_prop) > 0.97) &
               any(canon_pos != 34)) |
-             (any(max(new_prop) > 0.95) &
+             (any(max(new_prop) > 0.97) &
                 any(identity != 'A') &
@@ -424,8 +424,8 @@ any(canon_pos == 34) & any(type != "G")))
   # this makes sum all misinc types = 1
-  # additionally filter all clusters at each pos where misinc of highest nucl > 0.95
+  # additionally filter all clusters at each pos where misinc of highest nucl > 0.97
   sub_mods_aggtype_cyt = sub_mods_aggtype_cyt %>%
     group_by(isodecoder, canon_pos, bam, identity) %>%
     mutate(new_prop = proportion/sum(proportion)) %>%
-    filter(any(max(new_prop) < 0.95) |
-             (any(max(new_prop) >= 0.95 &
+    filter(any(max(new_prop) < 0.97) |
+             (any(max(new_prop) >= 0.97 &
                     any(identity == 'A') &
@@ -480,3 +480,3 @@ any(canon_pos == 34) &
                                               grepl("nmt", sub_mods_aggtype$isodecoder), ]
-    sub_mods_aggtype_mito = sub_mods_aggtype_mito %>% group_by(isodecoder, canon_pos, bam) %>% mutate(new_prop = proportion/sum(proportion)) %>% filter(any(max(new_prop) < 0.95))
+    sub_mods_aggtype_mito = sub_mods_aggtype_mito %>% group_by(isodecoder, canon_pos, bam) %>% mutate(new_prop = proportion/sum(proportion)) %>% filter(any(max(new_prop) < 0.97))
     
@@ -483,0 +483,0 @@ if(nrow(sub_mods_aggtype_mito) != 0) {

mimseq/version.py

@@ -1,1 +0,1 @@
-__version__ = "v1.3.3"
+__version__ = "v1.3.4"

PKG-INFO

 Metadata-Version: 2.1
 Name: mimseq
-Version: 1.3.3
+Version: 1.3.4
 Summary: Custom high-throughput tRNA sequencing alignment and quantification pipeline based on modification induced misincorporation cDNA synthesis.
@@ -9,3 +9,2 @@ Home-page: https://github.com/nedialkova-lab/mim-tRNAseq
 License: GPLv3
-Platform: UNKNOWN
 Classifier: Development Status :: 4 - Beta
@@ -19,4 +18,1 @@ Classifier: Environment :: Console
 License-File: LICENSE.txt
-
-UNKNOWN
-

mimseq/data/ce11-tRNAs/ce11-tRNAs_name_map.txt

-tRNAscan-SE_id	GtRNAdb_id
-chrI.trna1	tRX-Lys-NNN-7-1
-chrI.trna10	tRNA-Ile-TAT-1-1
-chrI.trna11	tRX-Lys-NNN-8-1
-chrI.trna12	tRX-Lys-NNN-2-1
-chrI.trna13	tRNA-Arg-TCG-2-1
-chrI.trna14	tRNA-Gly-TCC-1-2
-chrI.trna15	tRNA-Gly-TCC-1-4
-chrI.trna16	tRNA-Gly-TCC-1-6
-chrI.trna17	tRNA-Gln-TTG-2-1
-chrI.trna18	tRNA-Ile-TAT-1-2
-chrI.trna19	tRNA-Ser-TGA-3-1
-chrI.trna2	tRNA-Leu-CAG-2-1
-chrI.trna20	tRX-Lys-NNN-7-3
-chrI.trna21	tRNA-Glu-TTC-1-1
-chrI.trna22	tRNA-Gly-GCC-1-2
-chrI.trna23	tRNA-Gly-CCC-1-2
-chrI.trna24	tRNA-Asp-GTC-2-1
-chrI.trna25	tRX-Lys-NNN-8-2
-chrI.trna26	tRNA-Gly-TCC-1-8
-chrI.trna27	tRNA-Phe-GAA-6-1
-chrI.trna28	tRNA-Gly-GCC-4-1
-chrI.trna29	tRNA-Cys-GCA-1-2
-chrI.trna3	tRNA-Arg-TCT-2-1
-chrI.trna30	tRNA-Lys-CTT-1-4
-chrI.trna31	tRNA-Glu-CTC-1-3
-chrI.trna32	tRNA-Glu-CTC-1-4
-chrI.trna33	tRNA-Val-AAC-2-1
-chrI.trna34	tRNA-iMet-CAT-1-1
-chrI.trna35	tRNA-Arg-TCT-1-1
-chrI.trna36	tRNA-iMet-CAT-1-3
-chrI.trna37	tRNA-Ala-AGC-4-1
-chrI.trna38	tRNA-Val-AAC-2-3
-chrI.trna39	tRNA-Gly-TCC-5-1
-chrI.trna4	tRNA-Arg-TCT-2-2
-chrI.trna40	tRNA-Ser-GCT-1-1
-chrI.trna41	tRNA-Gly-TCC-1-10
-chrI.trna42	tRNA-Gly-TCC-1-9
-chrI.trna43	tRNA-Thr-TGT-1-1
-chrI.trna44	tRNA-Lys-CTT-1-5
-chrI.trna45	tRNA-Val-AAC-2-2
-chrI.trna46	tRNA-iMet-CAT-1-2
-chrI.trna47	tRNA-Glu-CTC-1-2
-chrI.trna48	tRNA-Ser-CGA-1-1
-chrI.trna49	tRNA-Leu-AAG-2-2
-chrI.trna5	tRNA-Tyr-GTA-2-1
-chrI.trna50	tRNA-Lys-CTT-1-3
-chrI.trna51	tRNA-Lys-CTT-1-2
-chrI.trna52	tRNA-Gly-TCC-1-7
-chrI.trna53	tRX-Lys-NNN-8-3
-chrI.trna54	tRNA-Gly-CCC-1-3
-chrI.trna55	tRNA-Gly-CCC-1-1
-chrI.trna56	tRX-Pro-NNN-4-1
-chrI.trna57	tRNA-Ile-TAT-1-3
-chrI.trna58	tRNA-Gly-TCC-1-5
-chrI.trna59	tRNA-Gly-TCC-1-3
-chrI.trna6	tRNA-Lys-CTT-1-1
-chrI.trna60	tRNA-Gly-TCC-1-1
-chrI.trna61	tRNA-Pro-AGG-4-2
-chrI.trna62	tRNA-Asn-GTT-1-1
-chrI.trna63	tRX-Und-NNN-1-1
-chrI.trna64	tRNA-Glu-CTC-1-1
-chrI.trna65	tRNA-Asn-GTT-3-1
-chrI.trna66	tRNA-Lys-CTT-2-1
-chrI.trna67	tRNA-Ile-AAT-1-1
-chrI.trna68	tRNA-Leu-AAG-2-1
-chrI.trna69	tRNA-Pro-AGG-4-1
-chrI.trna7	tRNA-Ile-AAT-1-2
-chrI.trna70	tRNA-Arg-ACG-1-1
-chrI.trna71	tRNA-Met-CAT-1-1
-chrI.trna72	tRNA-Gly-GCC-1-1
-chrI.trna73	tRNA-Trp-CCA-1-1
-chrI.trna8	tRNA-Cys-GCA-1-1
-chrI.trna9	tRX-Lys-NNN-7-2
-chrII.trna1	tRX-Pro-NNN-11-1
-chrII.trna10	tRNA-Glu-CTC-1-5
-chrII.trna11	tRNA-Lys-TTT-1-1
-chrII.trna12	tRNA-Leu-TAA-3-1
-chrII.trna13	tRNA-Leu-TAG-1-1
-chrII.trna14	tRNA-Glu-TTC-1-2
-chrII.trna15	tRNA-Ala-TGC-2-1
-chrII.trna16	tRNA-Thr-AGT-3-1
-chrII.trna17	tRNA-Arg-TCG-2-2
-chrII.trna18	tRX-Lys-NNN-3-1
-chrII.trna19	tRX-Met-NNN-2-1
-chrII.trna2	tRNA-Ser-AGA-2-1
-chrII.trna20	tRNA-Pro-TGG-1-1
-chrII.trna21	tRNA-Pro-TGG-1-2
-chrII.trna22	tRNA-Ala-TGC-1-2
-chrII.trna23	tRX-Lys-NNN-9-1
-chrII.trna24	tRNA-Val-TAC-4-1
-chrII.trna25	tRNA-Ile-AAT-1-6
-chrII.trna26	tRNA-Ile-AAT-1-7
-chrII.trna27	tRNA-Trp-CCA-3-1
-chrII.trna28	tRNA-Ala-AGC-1-4
-chrII.trna29	tRNA-Ala-TGC-1-3
-chrII.trna3	tRNA-Leu-AAG-2-5
-chrII.trna30	tRX-Asn-NNN-2-1
-chrII.trna31	tRNA-Leu-AAG-1-1
-chrII.trna32	tRNA-Gln-TTG-1-2
-chrII.trna33	tRNA-Arg-CCG-1-1
-chrII.trna34	tRNA-Leu-AAG-2-7
-chrII.trna35	tRNA-Lys-TTT-1-2
-chrII.trna36	tRNA-iMet-CAT-1-4
-chrII.trna37	tRX-Ser-NNN-1-1
-chrII.trna38	tRX-Lys-NNN-7-4
-chrII.trna39	tRNA-Ala-TGC-1-1
-chrII.trna4	tRNA-Gly-GCC-1-4
-chrII.trna40	tRNA-Lys-CTT-1-9
-chrII.trna41	tRNA-Pro-TGG-7-1
-chrII.trna42	tRNA-Pro-TGG-2-1
-chrII.trna43	tRNA-Phe-GAA-1-1
-chrII.trna44	tRNA-Tyr-GTA-4-1
-chrII.trna45	tRNA-Leu-TAA-2-1
-chrII.trna46	tRNA-Gln-TTG-1-1
-chrII.trna47	tRNA-Ala-AGC-1-3
-chrII.trna48	tRNA-Gly-GCC-5-1
-chrII.trna49	tRNA-Leu-TAA-1-1
-chrII.trna5	tRNA-Ser-AGA-2-2
-chrII.trna50	tRNA-Val-TAC-3-1
-chrII.trna51	tRNA-Ile-AAT-1-4
-chrII.trna52	tRNA-Ala-AGC-5-1
-chrII.trna53	tRX-Gln-NNN-5-1
-chrII.trna54	tRNA-Lys-CTT-1-8
-chrII.trna55	tRNA-Thr-AGT-1-2
-chrII.trna56	tRNA-His-GTG-2-1
-chrII.trna57	tRNA-Lys-CTT-1-7
-chrII.trna58	tRNA-Thr-AGT-2-1
-chrII.trna59	tRNA-Lys-CTT-1-6
-chrII.trna6	tRNA-Ala-AGC-1-1
-chrII.trna60	tRNA-Thr-AGT-1-1
-chrII.trna61	tRNA-Gly-GCC-1-3
-chrII.trna62	tRNA-Leu-AAG-2-6
-chrII.trna63	tRNA-Leu-AAG-2-4
-chrII.trna64	tRNA-Leu-AAG-2-3
-chrII.trna65	tRX-Thr-NNN-4-1
-chrII.trna66	tRX-Thr-NNN-5-1
-chrII.trna7	tRNA-Ile-AAT-1-3
-chrII.trna8	tRNA-Ile-AAT-1-5
-chrII.trna9	tRNA-Ala-AGC-1-2
-chrIII.trna1	tRNA-Tyr-GTA-2-2
-chrIII.trna10	tRX-Leu-NNN-5-1
-chrIII.trna11	tRX-Pro-NNN-7-1
-chrIII.trna12	tRX-Pro-NNN-9-1
-chrIII.trna13	tRNA-Tyr-GTA-7-1
-chrIII.trna14	tRNA-Lys-CTT-1-10
-chrIII.trna15	tRNA-Leu-CAA-1-1
-chrIII.trna16	tRNA-Thr-TGT-1-2
-chrIII.trna17	tRNA-Gly-GCC-1-5
-chrIII.trna18	tRNA-Leu-AAG-5-1
-chrIII.trna19	tRX-Phe-NNN-2-1
-chrIII.trna2	tRNA-Gly-TCC-1-11
-chrIII.trna20	tRNA-Ser-AGA-2-3
-chrIII.trna21	tRNA-Ser-CGA-3-1
-chrIII.trna22	tRNA-Ala-AGC-7-1
-chrIII.trna23	tRNA-Asn-GTT-1-2
-chrIII.trna24	tRNA-Gly-TCC-1-13
-chrIII.trna25	tRNA-Pro-TGG-4-1
-chrIII.trna26	tRNA-Met-CAT-1-2
-chrIII.trna27	tRNA-Leu-CAA-1-2
-chrIII.trna28	tRNA-Lys-CTT-1-12
-chrIII.trna29	tRNA-Leu-CAA-1-3
-chrIII.trna3	tRX-Arg-NNN-7-1
-chrIII.trna30	tRNA-Ser-AGA-2-4
-chrIII.trna31	tRNA-Phe-GAA-2-2
-chrIII.trna32	tRNA-Pro-TGG-1-5
-chrIII.trna33	tRNA-Val-AAC-2-4
-chrIII.trna34	tRNA-Val-AAC-2-5
-chrIII.trna35	tRX-Ala-NNN-5-1
-chrIII.trna36	tRNA-Phe-GAA-2-4
-chrIII.trna37	tRNA-Thr-CGT-2-1
-chrIII.trna38	tRNA-Ser-GCT-3-1
-chrIII.trna39	tRNA-Tyr-GTA-2-3
-chrIII.trna4	tRX-Arg-NNN-6-1
-chrIII.trna40	tRX-Lys-NNN-7-5
-chrIII.trna41	tRX-Lys-NNN-7-6
-chrIII.trna42	tRNA-Thr-TGT-1-3
-chrIII.trna43	tRNA-Asn-GTT-1-4
-chrIII.trna44	tRNA-Thr-CGT-2-2
-chrIII.trna45	tRNA-Gln-TTG-1-3
-chrIII.trna46	tRNA-Pro-TGG-1-4
-chrIII.trna47	tRX-Arg-NNN-8-1
-chrIII.trna48	tRNA-Thr-AGT-1-4
-chrIII.trna49	tRNA-Ser-AGA-1-1
-chrIII.trna5	tRX-Ser-NNN-6-1
-chrIII.trna50	tRNA-Ser-CGA-1-2
-chrIII.trna51	tRNA-Asn-GTT-1-3
-chrIII.trna52	tRNA-Trp-CCA-1-2
-chrIII.trna53	tRNA-Phe-GAA-2-3
-chrIII.trna54	tRNA-Pro-CGG-1-1
-chrIII.trna55	tRNA-Phe-GAA-2-1
-chrIII.trna56	tRNA-Glu-CTC-2-1
-chrIII.trna57	tRNA-Thr-AGT-1-3
-chrIII.trna58	tRNA-Gly-TCC-1-12
-chrIII.trna59	tRNA-Lys-TTT-1-3
-chrIII.trna6	tRX-Ser-NNN-7-1
-chrIII.trna60	tRNA-Arg-CCT-2-1
-chrIII.trna61	tRNA-Lys-CTT-4-1
-chrIII.trna62	tRNA-Ser-CGA-2-1
-chrIII.trna63	tRX-Ser-NNN-4-1
-chrIII.trna64	tRNA-Ser-GCT-1-2
-chrIII.trna65	tRNA-Gly-GCC-1-6
-chrIII.trna66	tRNA-Gly-GCC-3-1
-chrIII.trna67	tRNA-iMet-CAT-1-6
-chrIII.trna68	tRNA-Arg-TCG-2-3
-chrIII.trna69	tRNA-Arg-ACG-1-3
-chrIII.trna7	tRNA-iMet-CAT-1-5
-chrIII.trna70	tRNA-Arg-ACG-1-2
-chrIII.trna71	tRNA-Ala-AGC-3-1
-chrIII.trna72	tRNA-Lys-CTT-1-11
-chrIII.trna73	tRX-Leu-NNN-6-1
-chrIII.trna74	tRNA-Glu-CTC-1-8
-chrIII.trna75	tRNA-Glu-CTC-1-6
-chrIII.trna76	tRX-Ser-NNN-5-1
-chrIII.trna77	tRX-Gln-NNN-2-1
-chrIII.trna78	tRX-Gln-NNN-3-1
-chrIII.trna79	tRNA-Ile-AAT-1-10
-chrIII.trna8	tRNA-Glu-CTC-1-7
-chrIII.trna80	tRNA-Ile-AAT-1-9
-chrIII.trna81	tRNA-Ile-AAT-1-8
-chrIII.trna9	tRNA-Pro-TGG-1-3
-chrIV.trna1	tRNA-Arg-CCT-1-1
-chrIV.trna10	tRNA-Asp-GTC-4-1
-chrIV.trna11	tRNA-Asp-GTC-5-1
-chrIV.trna12	tRNA-Arg-ACG-1-4
-chrIV.trna13	tRX-Lys-NNN-5-1
-chrIV.trna14	tRNA-His-GTG-5-1
-chrIV.trna15	tRNA-Lys-TTT-1-4
-chrIV.trna16	tRNA-Gln-CTG-2-1
-chrIV.trna17	tRX-Lys-NNN-8-4
-chrIV.trna18	tRNA-Lys-CTT-1-13
-chrIV.trna19	tRX-Val-NNN-1-1
-chrIV.trna2	tRNA-Val-CAC-2-1
-chrIV.trna20	tRNA-Val-CAC-1-1
-chrIV.trna21	tRNA-Leu-CAG-1-1
-chrIV.trna22	tRNA-Ala-AGC-2-1
-chrIV.trna23	tRNA-Gln-TTG-1-4
-chrIV.trna24	tRNA-Pro-AGG-4-3
-chrIV.trna25	tRNA-His-GTG-1-1
-chrIV.trna26	tRNA-Lys-CTT-1-14
-chrIV.trna27	tRX-Lys-NNN-8-5
-chrIV.trna28	tRX-His-NNN-2-1
-chrIV.trna29	tRNA-Pro-TGG-1-6
-chrIV.trna3	tRNA-SeC-TCA-1-1
-chrIV.trna30	tRNA-His-GTG-4-1
-chrIV.trna31	tRX-Und-NNN-2-1
-chrIV.trna32	tRNA-Val-AAC-3-1
-chrIV.trna33	tRNA-Trp-CCA-1-6
-chrIV.trna34	tRNA-Lys-CTT-1-15
-chrIV.trna35	tRNA-Asp-GTC-2-7
-chrIV.trna36	tRNA-Glu-TTC-1-6
-chrIV.trna37	tRNA-His-GTG-2-2
-chrIV.trna38	tRNA-Ala-AGC-1-6
-chrIV.trna39	tRNA-Ala-AGC-1-7
-chrIV.trna4	tRNA-Asp-GTC-2-3
-chrIV.trna40	tRNA-Val-AAC-2-7
-chrIV.trna41	tRNA-His-GTG-2-3
-chrIV.trna42	tRNA-Ser-TGA-6-1
-chrIV.trna43	tRNA-Gly-TCC-1-16
-chrIV.trna44	tRNA-Gly-TCC-1-17
-chrIV.trna45	tRNA-Gly-TCC-1-18
-chrIV.trna46	tRNA-Gly-TCC-6-1
-chrIV.trna47	tRNA-Gly-TCC-1-15
-chrIV.trna48	tRNA-Ser-TGA-6-2
-chrIV.trna49	tRNA-Ala-AGC-1-5
-chrIV.trna5	tRNA-Glu-TTC-1-3
-chrIV.trna50	tRNA-Val-AAC-2-6
-chrIV.trna51	tRNA-Glu-TTC-1-5
-chrIV.trna52	tRNA-Asp-GTC-2-6
-chrIV.trna53	tRNA-Ala-TGC-1-5
-chrIV.trna54	tRNA-Ser-AGA-2-6
-chrIV.trna55	tRNA-Ser-AGA-2-5
-chrIV.trna56	tRNA-His-GTG-3-2
-chrIV.trna57	tRNA-His-GTG-3-1
-chrIV.trna58	tRNA-Arg-ACG-1-6
-chrIV.trna59	tRNA-Gly-TCC-1-14
-chrIV.trna6	tRX-Arg-NNN-9-1
-chrIV.trna60	tRNA-Ala-TGC-1-4
-chrIV.trna61	tRX-Lys-NNN-8-6
-chrIV.trna62	tRNA-Arg-ACG-1-5
-chrIV.trna63	tRNA-Gln-TTG-1-6
-chrIV.trna64	tRNA-Gln-CTG-2-2
-chrIV.trna65	tRNA-Pro-CGG-1-3
-chrIV.trna66	tRNA-Leu-CAA-1-4
-chrIV.trna67	tRNA-Gln-TTG-1-5
-chrIV.trna68	tRX-Gln-NNN-1-1
-chrIV.trna69	tRNA-Thr-TGT-1-4
-chrIV.trna7	tRNA-Asp-GTC-2-4
-chrIV.trna70	tRNA-Trp-CCA-1-5
-chrIV.trna71	tRNA-Trp-CCA-1-4
-chrIV.trna72	tRX-Und-NNN-3-1
-chrIV.trna73	tRNA-Trp-CCA-1-3
-chrIV.trna74	tRX-Lys-NNN-5-2
-chrIV.trna75	tRNA-Pro-CGG-1-2
-chrIV.trna76	tRX-Lys-NNN-7-7
-chrIV.trna77	tRNA-Asp-GTC-2-5
-chrIV.trna78	tRNA-Glu-TTC-2-1
-chrIV.trna79	tRX-Asp-NNN-1-1
-chrIV.trna8	tRNA-Asp-GTC-1-1
-chrIV.trna80	tRNA-Glu-TTC-1-4
-chrIV.trna81	tRX-Und-NNN-6-1
-chrIV.trna82	tRNA-Asp-GTC-2-2
-chrIV.trna9	tRNA-Asp-GTC-3-1
-chrV.trna1	tRNA-Ala-AGC-6-1
-chrV.trna10	tRNA-Arg-TCT-2-3
-chrV.trna100	tRNA-Leu-TAG-1-2
-chrV.trna101	tRNA-Met-CAT-1-4
-chrV.trna102	tRNA-Thr-CGT-5-1
-chrV.trna103	tRNA-Glu-TTC-3-1
-chrV.trna104	tRNA-Ser-GCT-1-3
-chrV.trna105	tRX-Lys-NNN-4-2
-chrV.trna106	tRNA-Gln-TTG-1-7
-chrV.trna107	tRX-Lys-NNN-6-1
-chrV.trna108	tRNA-Pro-TGG-5-1
-chrV.trna109	tRNA-Pro-TGG-6-1
-chrV.trna11	tRNA-Tyr-GTA-1-1
-chrV.trna110	tRNA-Met-CAT-1-3
-chrV.trna111	tRNA-Thr-AGT-1-5
-chrV.trna112	tRX-Und-NNN-9-1
-chrV.trna12	tRNA-Lys-TTT-1-5
-chrV.trna13	tRNA-Ala-CGC-4-1
-chrV.trna14	tRNA-Ala-CGC-3-1
-chrV.trna15	tRNA-Ile-TAT-2-2
-chrV.trna16	tRNA-Pro-TGG-1-10
-chrV.trna17	tRNA-Gln-CTG-1-1
-chrV.trna18	tRNA-Tyr-GTA-2-4
-chrV.trna19	tRNA-Asn-GTT-1-6
-chrV.trna2	tRNA-Thr-AGT-1-6
-chrV.trna20	tRNA-Lys-TTT-1-8
-chrV.trna21	tRNA-Tyr-GTA-1-2
-chrV.trna22	tRNA-Met-CAT-2-1
-chrV.trna23	tRNA-Ser-TGA-7-1
-chrV.trna24	tRNA-His-GTG-3-3
-chrV.trna25	tRNA-Thr-CGT-3-1
-chrV.trna26	tRNA-Asn-GTT-1-8
-chrV.trna27	tRNA-Asn-GTT-1-10
-chrV.trna28	tRX-Lys-NNN-8-7
-chrV.trna29	tRNA-Asp-GTC-2-9
-chrV.trna3	tRNA-Pro-TGG-1-7
-chrV.trna30	tRX-His-NNN-3-1
-chrV.trna31	tRX-Gly-NNN-8-1
-chrV.trna32	tRX-Gly-NNN-7-1
-chrV.trna33	tRX-Gly-NNN-6-1
-chrV.trna34	tRX-Ser-NNN-9-1
-chrV.trna35	tRX-Und-NNN-8-1
-chrV.trna36	tRX-Pro-NNN-10-1
-chrV.trna37	tRX-Pro-NNN-8-1
-chrV.trna38	tRNA-Phe-GAA-3-1
-chrV.trna39	tRNA-Glu-TTC-1-7
-chrV.trna4	tRNA-Pro-TGG-1-8
-chrV.trna40	tRX-His-NNN-8-1
-chrV.trna41	tRX-His-NNN-4-1
-chrV.trna42	tRX-His-NNN-6-1
-chrV.trna43	tRNA-Asn-GTT-1-11
-chrV.trna44	tRX-Ser-NNN-11-1
-chrV.trna45	tRX-Ser-NNN-8-1
-chrV.trna46	tRNA-Cys-GCA-1-5
-chrV.trna47	tRNA-Asn-GTT-1-13
-chrV.trna48	tRNA-Asn-GTT-1-12
-chrV.trna49	tRX-Ser-NNN-12-1
-chrV.trna5	tRNA-Gly-GCC-2-1
-chrV.trna50	tRX-Ser-NNN-10-1
-chrV.trna51	tRX-Gln-NNN-4-1
-chrV.trna52	tRX-Gly-NNN-5-1
-chrV.trna53	tRX-His-NNN-7-1
-chrV.trna54	tRX-Pro-NNN-5-1
-chrV.trna55	tRX-His-NNN-5-1
-chrV.trna56	tRX-Ala-NNN-7-1
-chrV.trna57	tRX-His-NNN-9-1
-chrV.trna58	tRX-Thr-NNN-6-1
-chrV.trna59	tRX-Thr-NNN-7-1
-chrV.trna6	tRNA-Cys-GCA-2-1
-chrV.trna60	tRX-Gly-NNN-9-1
-chrV.trna61	tRX-Gly-NNN-4-1
-chrV.trna62	tRNA-Thr-TGT-1-5
-chrV.trna63	tRX-Pro-NNN-6-1
-chrV.trna64	tRX-Und-NNN-4-1
-chrV.trna65	tRX-Cys-NNN-1-1
-chrV.trna66	tRX-Leu-NNN-7-1
-chrV.trna67	tRX-Und-NNN-7-1
-chrV.trna68	tRX-Val-NNN-2-1
-chrV.trna69	tRNA-Tyr-GTA-2-5
-chrV.trna7	tRX-Lys-NNN-4-1
-chrV.trna70	tRNA-Tyr-GTA-3-1
-chrV.trna71	tRNA-Asp-GTC-2-11
-chrV.trna72	tRNA-Asp-GTC-2-10
-chrV.trna73	tRNA-Lys-TTT-1-9
-chrV.trna74	tRNA-Gln-CTG-2-3
-chrV.trna75	tRX-Lys-NNN-8-8
-chrV.trna76	tRNA-Asn-GTT-1-9
-chrV.trna77	tRNA-Asn-GTT-1-7
-chrV.trna78	tRNA-Asp-GTC-2-8
-chrV.trna79	tRNA-Ser-TGA-5-1
-chrV.trna8	tRNA-Cys-GCA-1-3
-chrV.trna80	tRNA-Val-CAC-1-3
-chrV.trna81	tRNA-Gly-GCC-1-7
-chrV.trna82	tRNA-Ala-CGC-2-1
-chrV.trna83	tRNA-Pro-TGG-1-11
-chrV.trna84	tRNA-Val-AAC-2-8
-chrV.trna85	tRNA-Phe-GAA-2-5
-chrV.trna86	tRNA-Cys-GCA-1-4
-chrV.trna87	tRNA-Pro-TGG-1-9
-chrV.trna88	tRNA-Lys-TTT-1-7
-chrV.trna89	tRNA-Ala-AGC-1-8
-chrV.trna9	tRNA-Ile-TAT-2-1
-chrV.trna90	tRNA-Ser-TGA-2-1
-chrV.trna91	tRNA-Val-TAC-1-1
-chrV.trna92	tRNA-Asn-GTT-1-5
-chrV.trna93	tRNA-Val-CAC-1-2
-chrV.trna94	tRX-Leu-NNN-3-1
-chrV.trna95	tRNA-Leu-CAG-2-2
-chrV.trna96	tRNA-Tyr-GTA-6-1
-chrV.trna97	tRNA-Thr-AGT-1-8
-chrV.trna98	tRNA-Lys-TTT-1-6
-chrV.trna99	tRNA-Thr-AGT-1-7
-chrX.trna1	tRX-Glu-NNN-1-1
-chrX.trna10	tRNA-Arg-TCG-1-1
-chrX.trna100	tRNA-Leu-AAG-3-9
-chrX.trna101	tRNA-Ser-AGA-2-11
-chrX.trna102	tRNA-Thr-AGT-1-13
-chrX.trna103	tRNA-Thr-AGT-1-15
-chrX.trna104	tRNA-Val-TAC-3-2
-chrX.trna105	tRNA-Pro-TGG-1-18
-chrX.trna106	tRNA-Ile-AAT-1-18
-chrX.trna107	tRNA-Ser-GCT-2-1
-chrX.trna108	tRNA-Glu-CTC-1-14
-chrX.trna109	tRNA-Thr-TGT-1-9
-chrX.trna11	tRX-Phe-NNN-3-1
-chrX.trna110	tRNA-Leu-CAA-1-6
-chrX.trna111	tRNA-Lys-CTT-1-18
-chrX.trna112	tRNA-Lys-CTT-5-1
-chrX.trna113	tRNA-Lys-CTT-1-19
-chrX.trna114	tRNA-Lys-CTT-3-1
-chrX.trna115	tRNA-Lys-CTT-1-20
-chrX.trna116	tRNA-Lys-CTT-1-21
-chrX.trna117	tRNA-Lys-CTT-1-22
-chrX.trna118	tRNA-Lys-CTT-1-23
-chrX.trna119	tRX-Gly-NNN-2-1
-chrX.trna12	tRX-Thr-NNN-2-1
-chrX.trna120	tRNA-Glu-CTC-1-15
-chrX.trna121	tRX-Lys-NNN-7-12
-chrX.trna122	tRNA-Arg-CCT-1-2
-chrX.trna123	tRNA-His-GTG-2-5
-chrX.trna124	tRNA-His-GTG-2-7
-chrX.trna125	tRNA-His-GTG-2-9
-chrX.trna126	tRNA-Ser-AGA-1-2
-chrX.trna127	tRNA-Pro-TGG-1-21
-chrX.trna128	tRNA-Ile-AAT-1-19
-chrX.trna129	tRNA-Cys-GCA-1-12
-chrX.trna13	tRX-Arg-NNN-5-1
-chrX.trna130	tRNA-Gly-TCC-1-29
-chrX.trna131	tRNA-Val-AAC-2-12
-chrX.trna132	tRX-Thr-NNN-3-1
-chrX.trna133	tRNA-Ile-AAT-1-20
-chrX.trna134	tRX-Ala-NNN-6-1
-chrX.trna135	tRNA-Leu-CAG-1-2
-chrX.trna136	tRNA-Pro-TGG-8-1
-chrX.trna137	tRNA-Pro-TGG-1-22
-chrX.trna138	tRNA-Ser-AGA-3-1
-chrX.trna139	tRNA-Pro-TGG-1-24
-chrX.trna14	tRNA-Glu-TTC-1-8
-chrX.trna140	tRNA-Glu-CTC-4-1
-chrX.trna141	tRNA-Glu-CTC-5-1
-chrX.trna142	tRNA-Val-AAC-1-1
-chrX.trna143	tRNA-Val-AAC-1-2
-chrX.trna144	tRNA-Val-AAC-1-3
-chrX.trna145	tRNA-Val-AAC-1-4
-chrX.trna146	tRNA-Glu-CTC-1-19
-chrX.trna147	tRNA-iMet-CAT-1-9
-chrX.trna148	tRNA-Arg-TCG-4-1
-chrX.trna149	tRNA-Phe-GAA-7-1
-chrX.trna15	tRX-Leu-NNN-4-1
-chrX.trna150	tRNA-Phe-GAA-4-3
-chrX.trna151	tRNA-Phe-GAA-4-4
-chrX.trna152	tRNA-Phe-GAA-4-5
-chrX.trna153	tRNA-Glu-CTC-1-20
-chrX.trna154	tRNA-Val-CAC-1-4
-chrX.trna155	tRNA-Val-AAC-4-1
-chrX.trna156	tRNA-Val-AAC-3-2
-chrX.trna157	tRNA-Gly-GCC-1-11
-chrX.trna158	tRNA-Ser-GCT-1-7
-chrX.trna159	tRNA-His-GTG-2-11
-chrX.trna16	tRNA-Thr-TGT-2-1
-chrX.trna160	tRNA-Asp-GTC-2-21
-chrX.trna161	tRNA-Asp-GTC-2-20
-chrX.trna162	tRNA-Asp-GTC-6-1
-chrX.trna163	tRNA-Asp-GTC-2-19
-chrX.trna164	tRNA-Val-CAC-1-5
-chrX.trna165	tRNA-Phe-GAA-4-2
-chrX.trna166	tRNA-Glu-CTC-1-18
-chrX.trna167	tRNA-Glu-CTC-1-17
-chrX.trna168	tRNA-Glu-CTC-1-16
-chrX.trna169	tRNA-Lys-TTT-1-14
-chrX.trna17	tRX-Lys-NNN-8-9
-chrX.trna170	tRNA-Tyr-GTA-2-12
-chrX.trna171	tRNA-Tyr-GTA-2-11
-chrX.trna172	tRNA-Tyr-GTA-2-10
-chrX.trna173	tRNA-Tyr-GTA-2-9
-chrX.trna174	tRNA-Ser-TGA-2-2
-chrX.trna175	tRNA-Pro-TGG-1-23
-chrX.trna176	tRNA-Ser-CGA-2-2
-chrX.trna177	tRNA-Ser-AGA-4-1
-chrX.trna178	tRX-Pro-NNN-3-1
-chrX.trna179	tRX-Pro-NNN-1-1
-chrX.trna18	tRNA-Thr-AGT-1-9
-chrX.trna180	tRNA-Lys-CTT-1-25
-chrX.trna181	tRNA-Gly-TCC-1-28
-chrX.trna182	tRNA-Arg-TCT-3-2
-chrX.trna183	tRNA-Lys-CTT-6-1
-chrX.trna184	tRNA-Lys-CTT-1-24
-chrX.trna185	tRNA-Pro-TGG-1-20
-chrX.trna186	tRNA-Trp-CCA-2-1
-chrX.trna187	tRNA-Asp-GTC-2-18
-chrX.trna188	tRNA-His-GTG-2-10
-chrX.trna189	tRNA-His-GTG-2-8
-chrX.trna19	tRNA-Ile-AAT-2-1
-chrX.trna190	tRNA-His-GTG-2-6
-chrX.trna191	tRNA-Lys-TTT-1-13
-chrX.trna192	tRX-Lys-NNN-7-13
-chrX.trna193	tRX-Gly-NNN-3-1
-chrX.trna194	tRNA-Lys-CTT-7-1
-chrX.trna195	tRNA-Lys-CTT-1-17
-chrX.trna196	tRNA-Pro-TGG-1-19
-chrX.trna197	tRNA-Ser-GCT-1-6
-chrX.trna198	tRNA-Leu-CAA-2-1
-chrX.trna199	tRNA-Ile-AAT-1-17
-chrX.trna2	tRX-Lys-NNN-7-8
-chrX.trna20	tRNA-Asp-GTC-2-14
-chrX.trna200	tRNA-Tyr-GTA-5-1
-chrX.trna201	tRNA-Thr-AGT-1-14
-chrX.trna202	tRNA-Tyr-GTA-2-8
-chrX.trna203	tRNA-Gly-GCC-1-10
-chrX.trna204	tRNA-Ser-CGA-1-3
-chrX.trna205	tRNA-Leu-CAG-2-3
-chrX.trna206	tRNA-Ala-CGC-1-1
-chrX.trna207	tRNA-Pro-TGG-3-1
-chrX.trna208	tRNA-Ala-AGC-1-17
-chrX.trna209	tRNA-Glu-TTC-1-15
-chrX.trna21	tRNA-Gly-GCC-1-8
-chrX.trna210	tRNA-Leu-CAA-1-5
-chrX.trna211	tRNA-Arg-TCG-2-4
-chrX.trna212	tRNA-Lys-CTT-1-16
-chrX.trna213	tRNA-His-GTG-2-4
-chrX.trna214	tRNA-Thr-CGT-4-1
-chrX.trna215	tRNA-Gln-TTG-1-14
-chrX.trna216	tRX-Arg-NNN-3-1
-chrX.trna217	tRNA-Leu-TAA-1-2
-chrX.trna218	tRNA-Arg-ACG-3-10
-chrX.trna219	tRNA-Leu-AAG-3-8
-chrX.trna22	tRNA-Gly-TCC-1-20
-chrX.trna220	tRNA-Leu-AAG-3-7
-chrX.trna221	tRNA-Glu-TTC-1-14
-chrX.trna222	tRNA-Arg-ACG-3-9
-chrX.trna223	tRNA-Glu-TTC-1-12
-chrX.trna224	tRNA-Arg-ACG-3-8
-chrX.trna225	tRNA-Arg-ACG-3-6
-chrX.trna226	tRNA-Arg-ACG-2-1
-chrX.trna227	tRNA-Ile-TAT-1-4
-chrX.trna228	tRNA-Ala-AGC-1-15
-chrX.trna229	tRNA-Ala-AGC-1-14
-chrX.trna23	tRNA-Met-CAT-1-5
-chrX.trna230	tRNA-Val-AAC-2-10
-chrX.trna231	tRNA-Pro-TGG-1-17
-chrX.trna232	tRNA-iMet-CAT-1-8
-chrX.trna233	tRNA-Gln-TTG-1-13
-chrX.trna234	tRNA-Gln-TTG-1-12
-chrX.trna235	tRNA-Gln-TTG-1-11
-chrX.trna236	tRNA-Gln-TTG-1-10
-chrX.trna237	tRNA-Gln-TTG-5-1
-chrX.trna238	tRNA-Pro-AGG-5-1
-chrX.trna239	tRNA-Thr-CGT-1-1
-chrX.trna24	tRNA-Pro-TGG-1-12
-chrX.trna240	tRNA-Thr-TGT-1-7
-chrX.trna241	tRNA-Pro-TGG-1-15
-chrX.trna242	tRNA-Leu-AAG-3-6
-chrX.trna243	tRNA-Trp-CCA-1-10
-chrX.trna244	tRNA-Trp-CCA-1-9
-chrX.trna245	tRNA-Gly-TCC-3-1
-chrX.trna246	tRNA-Gly-TCC-1-26
-chrX.trna247	tRNA-Gly-TCC-1-24
-chrX.trna248	tRNA-Gly-TCC-1-23
-chrX.trna249	tRNA-Cys-GCA-1-11
-chrX.trna25	tRNA-Pro-AGG-1-1
-chrX.trna250	tRNA-Gly-GCC-1-9
-chrX.trna251	tRNA-Val-AAC-2-9
-chrX.trna252	tRNA-Arg-ACG-3-4
-chrX.trna253	tRNA-Arg-ACG-4-1
-chrX.trna254	tRNA-Cys-GCA-1-9
-chrX.trna255	tRNA-Arg-ACG-3-3
-chrX.trna256	tRNA-Cys-GCA-1-7
-chrX.trna257	tRNA-Cys-GCA-1-6
-chrX.trna258	tRNA-Gln-CTG-2-4
-chrX.trna259	tRX-Lys-NNN-8-11
-chrX.trna26	tRNA-Pro-AGG-2-1
-chrX.trna260	tRNA-Leu-AAG-3-4
-chrX.trna261	tRNA-Leu-AAG-3-3
-chrX.trna262	tRNA-Leu-AAG-6-1
-chrX.trna263	tRNA-Arg-TCT-3-1
-chrX.trna264	tRNA-Ile-AAT-1-16
-chrX.trna265	tRNA-Ser-AGA-2-7
-chrX.trna266	tRNA-Asp-GTC-2-16
-chrX.trna267	tRNA-Arg-ACG-3-2
-chrX.trna268	tRNA-Glu-CTC-1-13
-chrX.trna269	tRNA-Gly-TCC-1-21
-chrX.trna27	tRNA-Gly-TCC-7-1
-chrX.trna270	tRNA-Asn-GTT-1-16
-chrX.trna271	tRNA-Ala-AGC-1-11
-chrX.trna272	tRNA-Ala-AGC-1-10
-chrX.trna273	tRNA-Thr-AGT-1-12
-chrX.trna274	tRNA-Leu-AAG-3-2
-chrX.trna275	tRX-Lys-NNN-6-3
-chrX.trna276	tRNA-Ala-TGC-1-7
-chrX.trna277	tRNA-Arg-ACG-3-1
-chrX.trna278	tRNA-Pro-TGG-1-13
-chrX.trna279	tRNA-Lys-TTT-1-11
-chrX.trna28	tRX-Ile-NNN-1-1
-chrX.trna280	tRNA-Met-CAT-1-6
-chrX.trna281	tRNA-Phe-GAA-5-1
-chrX.trna282	tRX-Lys-NNN-7-11
-chrX.trna283	tRNA-Ile-AAT-1-15
-chrX.trna284	tRNA-His-GTG-3-4
-chrX.trna285	tRNA-Val-TAC-2-1
-chrX.trna286	tRNA-Thr-AGT-1-10
-chrX.trna287	tRNA-Glu-CTC-1-9
-chrX.trna288	tRNA-Asn-GTT-1-14
-chrX.trna289	tRNA-Ile-AAT-1-14
-chrX.trna29	tRNA-Glu-CTC-1-10
-chrX.trna290	tRX-Lys-NNN-8-10
-chrX.trna291	tRNA-Asp-GTC-2-13
-chrX.trna292	tRNA-Thr-TGT-2-2
-chrX.trna293	tRX-Tyr-NNN-2-1
-chrX.trna294	tRNA-Pro-CGG-1-4
-chrX.trna295	tRNA-Arg-CCT-3-1
-chrX.trna296	tRX-Ser-NNN-2-1
-chrX.trna297	tRX-Arg-NNN-2-1
-chrX.trna298	tRNA-Ile-AAT-1-13
-chrX.trna299	tRNA-Ile-AAT-1-12
-chrX.trna3	tRNA-Gln-TTG-1-8
-chrX.trna30	tRNA-Glu-CTC-1-11
-chrX.trna300	tRNA-Ile-AAT-1-11
-chrX.trna301	tRX-Und-NNN-5-1
-chrX.trna302	tRNA-Gly-TCC-1-19
-chrX.trna303	tRNA-Arg-TCG-3-1
-chrX.trna304	tRNA-Tyr-GTA-2-6
-chrX.trna305	tRNA-Asp-GTC-2-12
-chrX.trna306	tRNA-Leu-AAG-3-1
-chrX.trna307	tRX-Lys-NNN-7-9
-chrX.trna31	tRNA-Glu-TTC-1-9
-chrX.trna32	tRNA-Thr-AGT-1-11
-chrX.trna33	tRNA-Lys-TTT-1-10
-chrX.trna34	tRX-Lys-NNN-7-10
-chrX.trna35	tRNA-Met-CAT-1-7
-chrX.trna36	tRNA-Met-CAT-1-8
-chrX.trna37	tRNA-Met-CAT-1-9
-chrX.trna38	tRNA-Ser-GCT-1-4
-chrX.trna39	tRNA-Ser-GCT-1-5
-chrX.trna4	tRNA-Thr-TGT-1-6
-chrX.trna40	tRNA-Lys-TTT-1-12
-chrX.trna41	tRNA-Pro-TGG-1-14
-chrX.trna42	tRNA-Ala-TGC-1-6
-chrX.trna43	tRNA-Trp-CCA-1-7
-chrX.trna44	tRNA-Phe-GAA-4-1
-chrX.trna45	tRX-Lys-NNN-6-2
-chrX.trna46	tRNA-Ala-AGC-1-9
-chrX.trna47	tRNA-Glu-CTC-1-12
-chrX.trna48	tRNA-Asn-GTT-2-1
-chrX.trna49	tRNA-Asn-GTT-1-15
-chrX.trna5	tRX-Arg-NNN-1-1
-chrX.trna50	tRNA-Gly-TCC-1-22
-chrX.trna51	tRNA-Glu-CTC-3-1
-chrX.trna52	tRNA-Pro-AGG-3-1
-chrX.trna53	tRX-Ser-NNN-3-1
-chrX.trna54	tRNA-Asp-GTC-2-15
-chrX.trna55	tRNA-Ser-AGA-2-8
-chrX.trna56	tRNA-Asp-GTC-2-17
-chrX.trna57	tRNA-Ser-AGA-2-9
-chrX.trna58	tRNA-Asp-GTC-7-1
-chrX.trna59	tRNA-iMet-CAT-1-7
-chrX.trna6	tRNA-Arg-TCG-3-2
-chrX.trna60	tRNA-Arg-TCT-2-4
-chrX.trna61	tRNA-Arg-TCT-2-5
-chrX.trna62	tRNA-Asn-GTT-1-17
-chrX.trna63	tRNA-Gln-TTG-1-9
-chrX.trna64	tRNA-Arg-ACG-5-1
-chrX.trna65	tRNA-Cys-GCA-1-8
-chrX.trna66	tRNA-Cys-GCA-1-10
-chrX.trna67	tRNA-Glu-TTC-1-10
-chrX.trna68	tRNA-Gly-TCC-4-1
-chrX.trna69	tRNA-Gly-TCC-1-25
-chrX.trna7	tRX-Asp-NNN-2-1
-chrX.trna70	tRNA-Glu-TTC-1-11
-chrX.trna71	tRNA-Gly-TCC-2-1
-chrX.trna72	tRNA-Trp-CCA-1-8
-chrX.trna73	tRNA-Gln-TTG-4-1
-chrX.trna74	tRNA-Leu-AAG-3-5
-chrX.trna75	tRNA-Pro-TGG-1-16
-chrX.trna76	tRNA-Ser-AGA-2-10
-chrX.trna77	tRNA-Gln-CTG-2-5
-chrX.trna78	tRNA-Gln-TTG-3-1
-chrX.trna79	tRNA-Ala-AGC-1-12
-chrX.trna8	tRX-Asp-NNN-3-1
-chrX.trna80	tRNA-Ala-AGC-1-13
-chrX.trna81	tRNA-Ala-TGC-1-8
-chrX.trna82	tRNA-Ala-AGC-1-16
-chrX.trna83	tRNA-Ser-TGA-1-1
-chrX.trna84	tRNA-Arg-ACG-3-5
-chrX.trna85	tRNA-Arg-ACG-3-7
-chrX.trna86	tRNA-Glu-TTC-1-13
-chrX.trna87	tRNA-Gly-TCC-1-27
-chrX.trna88	tRNA-Leu-TAG-1-3
-chrX.trna89	tRNA-Asn-GTT-1-18
-chrX.trna9	tRX-Ser-NNN-2-2
-chrX.trna90	tRNA-Gln-CTG-3-1
-chrX.trna91	tRNA-Thr-CGT-6-1
-chrX.trna92	tRX-Lys-NNN-6-4
-chrX.trna93	tRNA-Thr-TGT-1-8
-chrX.trna94	tRNA-Ile-TAT-2-3
-chrX.trna95	tRNA-Tyr-GTA-2-7
-chrX.trna96	tRNA-Val-AAC-2-11
-chrX.trna97	tRNA-Ser-TGA-4-1
-chrX.trna98	tRNA-Gln-TTG-1-15
-chrX.trna99	tRNA-Gln-TTG-1-16

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Improved metrics

Total package byte prevSize

18023710

0.69%

Number of package files

177

1.72%

Lines of code

3582

1.27%