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mrftools

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mrftools

Tools for Magnetic Resonance Fingerprinting

  • 0.2.10
  • PyPI
  • Socket score

Maintainers
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mrftools

Python / pip package for managing MRF sequence definitions, dictionary definitions, bloch simulation results, and more. Utilizes HDF5 interchange format (.mrf files).

Features

  1. MRF Sequence definitions
    • Intended to define a sequence for execution on the scanner or within a bloch simulation
    • Supports timepoints with varying TR, TE, and FA
    • Supports multiple "beats" with varying RRTime, PrepTime, and PrepID
    • Can be defined programatically via Python, via .txt import, or via .mrf import
    • Can be exported to .txt format or .mrf format (** txt export not implemented fully **)
  2. MRF Dictionary definitions
    • Intended to define a set of dictionary entries to be used by a bloch simulation
    • Supports entries with varying T1, T2, and B0 values
    • Can be defined programatically via Python, via .txt import, or via .mrf import
    • Can be exported to .txt format or .mrf format
  3. MRF Simulation definitions
    • Intended to specify and execute a bloch simulation of a specific sequence over a specific dictionary set
    • Configurable phase range and number of isochromat spins
    • Can either store all isochromat results or perform averaging before saving dictionary
    • Results and configuration can be exported to .mrf format

Installation from pip

  1. pip install mrftools

Installation from source

  1. git clone https://gitlab.casemri.com/common-resources/mrftools
  2. cd mrftools
  3. pip install .

Building and Publishing pip Package

setuptools wheel twine

  1. python3 setup.py bdist_wheel
  2. twine upload dist/*

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