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napari-bil-data-viewer
Readme
View datasets archived at the Brain Image Library.
**NOTE: This plugin is under early development. Currently, only a subset of single-channel, fMOST datasets which include projections are available to view. An example can be found here.
This napari plugin was generated with Cookiecutter using with @napari's cookiecutter-napari-plugin template.
Option #1: Install plugin via the napari plugin menu
Option #2: Install a fresh python virtual environment
# Example of venv creation using conda
conda create -y -n bil-viewer python=3.8
conda activate bil-viewer
# Install napari-bil-data-viewer
pip install napari-bil-data-viewer
# Run Napari
napari
Please consider contributing to this project! Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
Distributed under the terms of the BSD-3 license, "napari-bil-data-viewer" is free and open source software
If you encounter any problems, please file an issue along with a detailed description.
Initial release.
v0.1.1 & v0.1.2:
Changes to documentation
v0.1.3:
Added all available summary fMOST datasets
v0.2.0:
Added support for SWC neuron tracings
v0.3.0:
Added support for multiscale OME zarr data
v0.4.0:
Add scale controls for layers
v0.4.2:
Add URL input to visualize image stacks (tif, tiff, jp2)
v0.5.0:
Split the plugin into 5 widgets:
v0.5.1:
Add metadata link to curated datasets
v0.6.0:
Add widget to visualize histology RGB tiffs
FAQs
Napari plugin for viewing Brain Image Library datasets
We found that napari-bil-data-viewer demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
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