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The neuromaps
toolbox is designed to help researchers make easy,
statistically-rigorous comparisons between brain maps (or brain annotations).
Documentation can be found here <https://netneurolab.github.io/neuromaps/>
_.
The accompanying paper is published in Nature Methods <https://www.nature.com/articles/s41592-022-01625-w>
_ (postprint <https://github.com/netneurolab/neuromaps/blob/main/markello2022natmethods.pdf>
_).
.. image:: https://github.com/netneurolab/neuromaps/raw/main/docs/_static/neuromaps_features.png
Currently, neuromaps
works with Python 3.8+.
You can install stable versions of neuromaps
from PyPI with pip install neuromaps
.
However, we recommend installing from the source repository to get the latest features and bug fixes.
You can install neuromaps
from the source repository with pip install git+https://github.com/netneurolab/neuromaps.git
or by cloning the repository and installing from the local directory:
.. code-block:: bash
git clone https://github.com/netneurolab/neuromaps
cd neuromaps
pip install .
You will also need to have Connectome Workbench <https://www.humanconnectome. org/software/connectome-workbench>
_ installed and available on your path in
order to use most of the transformation / resampling functionality of
neuromaps
.
.. _installation:
If you use the neuromaps
toolbox, please cite our paper <https://www.nature.com/articles/s41592-022-01625-w>
_.
Importantly, neuromaps
implements and builds on tools that have been previously developed, and we redistribute data that was acquired elsewhere.
Please be sure to cite the appropriate literature when using neuromaps
, which we detail below.
Buckner et al 2011 <https://journals.physiology.org/doi/full/10.1152/jn.00339.2011>
_ (original proposition) and Wu et al 2018 <https://onlinelibrary.wiley.com/doi/10.1002/hbm.24213>
_ (first implementation of MNI152 to fsaverage transformation).Robinson et al 2014 <https://www.sciencedirect.com/science/article/pii/S1053811914004546?via%3Dihub>
_ and Robinson et al 2018 <https://www.sciencedirect.com/science/article/pii/S1053811917308649?via%3Dihub>
_.neuromaps
, please cite the the original papers that publish the data. A table with references for each brain annotation can be found in our wiki <https://github.com/netneurolab/neuromaps/wiki>
, or more specifically, at this <https://docs.google.com/spreadsheets/d/1oZecOsvtQEh5pQkIf8cB6CyhPKVrQuko/edit?rtpof=true&sd=true#gid=1162991686>
link.full list <https://netneurolab.github.io/neuromaps/api.html#module-neuromaps.nulls>
_ of functions.This work is licensed under a
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License cc-by-nc-sa
.
The full license can be found in the
LICENSE <https://github.com/netneurolab/neuromaps/blob/main/neuromaps /LICENSE>
_ file in the neuromaps
distribution.
FAQs
A toolbox for projecting, resampling, and comparing brain maps
We found that neuromaps demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 4 open source maintainers collaborating on the project.
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