nheatmap

nheatmap

Inspired by pheatmap in R, this plotting tool aims to enable multi-level heatmap with the option to perform hierarchical clustering. The goal is to develop a python plotting package that is both intuitive in usage and extensive in plotting configuration.

Requirements

• python >= 3.5
• matplotlib >= 3.0.3
• scipy >= 1.3.1
• numpy >= 1.17.2
• pandas >= 0.25.1

Installation

• Option 1 via pip:

pip install nheatmap

• Option 2 via github:

git clone https://github.com/xuesoso/nheatmap

Include the cloned directory as part of the python path

Usage

• Check here for a tutorial on usage.

To-do

• Documentation of the code
• Cutting of heatmap
• Bottom panel plots
• Enable usage of AnnData structure
• Highlight individual rows / columns

Other plotting tools

• DensityPlot