OpenVariant provides different functionalities to read, parse and operate different multiple input file formats, being able to customize the output.
OpenVariant is a comprehensive Python package that provides different functionalities to read, parse and operate
different multiple input file formats (e. g. tsv, csv, vcf, maf, bed), being able to customize the output.
Its aim is being able to manage a ton of data represented in multiple ways and be able to build an unified output with a proper annotation file structure. This package was thought to work with any kind of data that can be represented as a table.
Documentation: https://openvariant.readthedocs.io
OpenVariant offers a toolkit to transform and operate the parsed input data. We will be able to apply different functionalities on our parsed result some of them are the following ones:
Check User guide in OpenVariant's documentation to find all the information about how it works and how can be applied the different functionalities.
It requires Python 3 or higher and can be installed as PyPI package with:
pip install open-variant
For more details check our Installation section.
We offer a bunch of Examples to we be able to understand how OpenVariant can be applied. Also, check Examples section in OpenVariant's documentation.
Feel free to contribute as much as you want to the code.
See CONTRIBUTING for guidelines on contributing and respect your behaviour specified at CODE OF CONDUCT.
The software is licensed under BSD-3-Clause.
FAQs
OpenVariant provides different functionalities to read, parse and operate different multiple input file formats, being able to customize the output.
We found that open-variant demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 2 open source maintainers collaborating on the project.
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