prestools

========= prestools

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My personal functions and utilities for Python programming.

• Free software: MIT license
• Documentation: https://prestools.readthedocs.io
• GitHub repo: https://github.com/robertopreste/prestools

Features

Several ready-to-use functions for different tasks:

• bioinformatics (prestools.bioinf)
• data clustering (prestools.clustering)
• plotting (prestools.graph)
• miscellaneous (prestools.misc)

Please refer to the Usage_ section of the documentation for further details.

Installation

Install prestools using pip (Python 3 only)::

pip install prestools

Please refer to the Installation_ section of the documentation for further details.

Credits

This package was created with Cookiecutter_ and the cc-pypackage_ project template.

.. _Usage: https://prestools.readthedocs.io/en/latest/usage.html .. _Installation: https://prestools.readthedocs.io/en/latest/installation.html .. _Cookiecutter: https://github.com/audreyr/cookiecutter .. _cc-pypackage: https://github.com/robertopreste/cc-pypackage

======= History

0.1.0 (2019-03-07)

• First development release.

0.1.1 (2019-03-14)

• Add functions for clustering data.

0.1.2 (2019-03-15)

• Add hamming_distance() and mutate_sequence() functions in prestools.bioinf and related tests;
• Clean code style.

0.1.3 (2019-03-19)

• Add command line interface commands and related tests for bioinf and misc modules;
• Add filter_type() function in prestools.misc and related tests;
• Clean code style.

0.1.4 (2019-03-23)

• Add wordcount() function in prestools.misc and related tests.

0.1.5 (2019-04-05)

• Add equal_files() function in prestools.misc and related tests;
• Update docstrings.

0.1.6 (2019-04-11)

• Add random_image() function and CLI in prestools.plotting.

0.1.7 (2019-04-20)

• Add benchmark() function in prestools.misc and related tests.

0.1.8 (2019-04-26)

• Change pm.benchmark() function to a decorator;
• Add several distance calculation functions to prestools.bioinf and related tests;
• Reformat code in prestools.bioinf.

0.1.9 (2019-04-27)

• Add distance functions to bioinf CLI command and related tests.

0.1.10 (2019-05-06)

• Change plotting library name to graph (to avoid alias conflict with pandas_profiling).

0.1.11 (2019-05-07)

• Fix docstrings and type hints;
• Update documentation.

0.1.12 (2019-05-08)

• Add apply_parallel function to prestools.misc.

0.1.13 (2019-06-22)

• Add short version arguments to reverse_complement bioinf function.

0.1.14 (2019-07-03)

• Add learn module and related tests;
• Remove random_image from graph module;
• Clean code.

0.2.0 (2019-08-14)

• Add rpkm and quantile_norm functions to prestools.bioinf;
• Add reduce_xaxis_ticks and reduce_yaxis_ticks functions to prestools.graph;
• Move flatten_image to prestools.graph;
• Remove prestools.learn;
• Update related tests;
• Fix documentation and API.

0.2.1 (2019-09-07)

• Add plot_confusion_matrix to prestools.graph;
• Add related tests;
• Drop support for Python < 3.6;
• Update requirements;
• Update documentation.