py-itree

🌳 iTree - an Interval Tree library

In computer science, an interval tree is a tree data structure to hold intervals. Every node in itree has a start and an end value.

Installation

itree supports Linux, MacOS and Windows operating systems.

Installation With pip

You can install itree by running:

  pip install py-itree

Build From Source With cmake

🍀 For MacOS with M1 Chip, some Windows OS, embedded systems, or different python versions where the method above doesn't work, please use the following workaround.

• Install cmake (version>3.4)
• Run the following command to build it locally:

pip install https://github.com/juncongmoo/itree/archive/refs/tags/v0.0.18.tar.gz

Quick Start

• Symbol For Node And Tree

  🟢  - normal node; 
  🔵  - zero interval node; 
  🍁  - leaf node, which means no child node
  🌳  - a tree

• Create Some Nodes

  >>> import itree
  >>> itree.Node('fruit', 0, 40)
  [🍁 n=fruit,s=0.00,e=40.00,x=0,c=0]
  >>> itree.Node('fruit')
  [🔵 n=fruit]
  >>> a=itree.Node('fruit', 0, 200)
  >>> b=itree.Node('apple', 10, 20)
  >>> print(a)
  [🍁 n=fruit,s=0.00,e=40.00,x=0,c=0]
  >>> a.append(b)
  >>> print(a)
  [🟢 n=fruit,s=0.00,e=200.00,x=0,c=1]
  >>> print(b)
  [🍁 n=apple,s=10.00,e=20.00,x=0,c=0]
  >>> print(a.nodes)
  [[🍁 n=apple,s=10.00,e=20.00,x=0,c=0]]
  >>> 

• Create And Render A Tree

  >>> from itree import Tree
  >>> def demo_tree():
        t = Tree(tid="123", extra={"img": "1241241313.png"})
        t.start("root", 1, {"name": "itree"})
        t.start("math", 2, {"age": 10})
        t.start("music", 3, {"location": [1, 2, 3]})
        t.end("music", 4, {"price": 12.3})
        t.end("math", 16284000, {"memory": (1, 2, 3)})
        t.start("music", 122840057.8713503)
        t.end("music", 1228400500)
        t.start("music", 32840057.8713503)
        t.start("egg", 3284.8713503)
        t.start("icecream", 32843.8713503)
        t.start("pizza", 32843.8713503)
        t.end("pizza", 62845003)
        t.end("icecream", 62845003)
        t.end("egg", 6284500)
        t.end("music", 628400500)
        t.start("piggy", 3284.8713503)
        t.start("unicorn", 32843.8713503)
        t.start("monkey", 32843.8713503)
        t.end("monkey", 62845003)
        t.end("unicorn", 62845003)
        t.end("piggy", 6284500)
        t.end("root", 1628400570.8713503)
        print(f"{t.count},{t.depth}")
        t.consolidate()
        img_path = t.to_img()
        return img_path, t
  >>> img_path, t = demo_tree()
  >>> t
  (🌳 id=123,c=11,x=1,d=6,m=0,o=1)

Run the demo_tree() function, a tree digraph will be generated:

The green circle node is a virtual node. The yellow record box is the node with the longest interval.

A virtual node is a conceptual node which could have many subnodes/subtrees.

Development

Turn on local build to ON in itree/CMakeLists.txt:

option(LOCAL_BUILD "build locally" OFF)

• Test

$python -m unittest discover
...............
----------------------------------------------------------------------
Ran 15 tests in 1.209s

OK

• Format

find itree -path itree/pybind11 -prune -o -iname *.h -o -iname *.cpp | xargs clang-format -i
black -S . --exclude '(\.history|\.vscode|\.git|\.VSCodeCounter|venv|workspace|pybind11)'

• Build

rm -fr itree/build/ && ./release.sh && yes | cp itree/build/_itree.* itree/
pip install --editable .

License

Tree is licensed under the Apache 2.0 License.