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qbiome

Analyzing microbiome abundance data to infer deep structures


Maintainers
2

=============== Qbiome

.. figure:: https://img.shields.io/pypi/dm/qbiome.svg :alt: qbiome PyPI Downloads .. figure:: https://img.shields.io/pypi/v/qbiome.svg :alt: qbiome curent version

.. image:: http://zed.uchicago.edu/logo/qbiome.png :height: 300px :scale: 30 % :alt: qbiome logo :align: center

.. class:: no-web no-pdf

:Info: Draft link will be posted here :Author: ZeD@UChicago <zed.uchicago.edu> :Description: Application of quasinets (https://pypi.org/project/quasinet/) for microbiome analysis for learning rules of organization, maturation, competition and succession in microbiome ecosystems. :Documentation: https://zeroknowledgediscovery.github.io/qbiome/qbiome/index.html

Usage:

.. code-block::

import qbiome
from qbiome.data_formatter import DataFormatter
from qbiome.quantizer import Quantizer
from qbiome.qnet_orchestrator import QnetOrchestrator
from qbiome.forecaster import Forecaster

.. image:: https://github.com/zeroknowledgediscovery/qbiome/raw/main/images/img2.png :scale: 50 % :alt: alternate text :align: center

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