scoring-matrices - npm Package Compare versions

Comparing version 0.2.0 to 0.2.1

PKG-INFO

 Metadata-Version: 2.1
 Name: scoring-matrices
-Version: 0.2.0
+Version: 0.2.1
 Summary: Dependency free, Cython-compatible scoring matrices to use with biological sequences.
@@ -81,4 +81,16 @@ Home-page: https://github.com/althonos/score-matrices
 
-`scoring-matrices` is available for all modern Python versions (3.6+).
+`scoring-matrices` can be installed directly from [PyPI](https://pypi.org/project/scoring-matrices/),
+which hosts some pre-built wheels for the x86-64 architecture (Linux/OSX/Windows)
+and the Aarch64 architecture (Linux/OSX), as well as the code required to
+compile from source with Cython:
+```console
+$ pip install scoring-matrices
+```
 
+Otherwise, `scoring-matrices` is also available as a [Bioconda](https://bioconda.github.io/)
+package:
+```console
+$ conda install bioconda::scoring-matrices
+```
+
 ## 💡 Usage
@@ -114,4 +126,4 @@
   cdef ScoringMatrix blosum = ScoringMatrix.from_name("BLOSUM62")
-  cdef const float*  data   = blosum.data()    # dense array
-  cdef const float** matrix = blosum.matrix()  # array of pointers
+  cdef const float*  data   = blosum.data_ptr()    # dense array
+  cdef const float** matrix = blosum.matrix_ptr()  # array of pointers
   ```
@@ -118,0 +130,0 @@ - Access the `ScoringMatrix` weights as a [typed memoryview](https://cython.readthedocs.io/en/latest/src/userguide/memoryviews.html)

README.md

@@ -45,4 +45,16 @@ # 🧬🔠 `scoring-matrices` [![Stars](https://img.shields.io/github/stars/althonos/scoring-matrices.svg?style=social&maxAge=3600&label=Star)](https://github.com/althonos/scoring-matrices/stargazers)
 
-`scoring-matrices` is available for all modern Python versions (3.6+).
+`scoring-matrices` can be installed directly from [PyPI](https://pypi.org/project/scoring-matrices/),
+which hosts some pre-built wheels for the x86-64 architecture (Linux/OSX/Windows)
+and the Aarch64 architecture (Linux/OSX), as well as the code required to
+compile from source with Cython:
+```console
+$ pip install scoring-matrices
+```
 
+Otherwise, `scoring-matrices` is also available as a [Bioconda](https://bioconda.github.io/)
+package:
+```console
+$ conda install bioconda::scoring-matrices
+```
+
 ## 💡 Usage
@@ -78,4 +90,4 @@
   cdef ScoringMatrix blosum = ScoringMatrix.from_name("BLOSUM62")
-  cdef const float*  data   = blosum.data()    # dense array
-  cdef const float** matrix = blosum.matrix()  # array of pointers
+  cdef const float*  data   = blosum.data_ptr()    # dense array
+  cdef const float** matrix = blosum.matrix_ptr()  # array of pointers
   ```
@@ -82,0 +94,0 @@ - Access the `ScoringMatrix` weights as a [typed memoryview](https://cython.readthedocs.io/en/latest/src/userguide/memoryviews.html)

scoring_matrices.egg-info/PKG-INFO

 Metadata-Version: 2.1
 Name: scoring-matrices
-Version: 0.2.0
+Version: 0.2.1
 Summary: Dependency free, Cython-compatible scoring matrices to use with biological sequences.
@@ -81,4 +81,16 @@ Home-page: https://github.com/althonos/score-matrices
 
-`scoring-matrices` is available for all modern Python versions (3.6+).
+`scoring-matrices` can be installed directly from [PyPI](https://pypi.org/project/scoring-matrices/),
+which hosts some pre-built wheels for the x86-64 architecture (Linux/OSX/Windows)
+and the Aarch64 architecture (Linux/OSX), as well as the code required to
+compile from source with Cython:
+```console
+$ pip install scoring-matrices
+```
 
+Otherwise, `scoring-matrices` is also available as a [Bioconda](https://bioconda.github.io/)
+package:
+```console
+$ conda install bioconda::scoring-matrices
+```
+
 ## 💡 Usage
@@ -114,4 +126,4 @@
   cdef ScoringMatrix blosum = ScoringMatrix.from_name("BLOSUM62")
-  cdef const float*  data   = blosum.data()    # dense array
-  cdef const float** matrix = blosum.matrix()  # array of pointers
+  cdef const float*  data   = blosum.data_ptr()    # dense array
+  cdef const float** matrix = blosum.matrix_ptr()  # array of pointers
   ```
@@ -118,0 +130,0 @@ - Access the `ScoringMatrix` weights as a [typed memoryview](https://cython.readthedocs.io/en/latest/src/userguide/memoryviews.html)

scoring_matrices/__init__.py

@@ -1,2 +0,2 @@
-__version__ = "0.2.0"
+__version__ = "0.2.1"
 __author__ = "Martin Larralde <[e-mail]>"
@@ -3,0 +3,0 @@ __license__ = "MIT"

scoring_matrices/lib.pyi

@@ -41,2 +41,6 @@ import typing
     def __eq__(self, other: object) -> bool: ...
+    @property
+    def alphabet(self) -> str: ...
+    @property
+    def name(self) -> Optional[str]: ...
     @typing.overload
@@ -43,0 +47,0 @@ def __getitem__(self, item: int) -> List[float]: ...

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Improved metrics

Total package byte prevSize

366297

0.39%

Lines of code

545

0.74%