scoring-matrices - npm Package Compare versions

Comparing version 0.2.1 to 0.2.2

PKG-INFO

 Metadata-Version: 2.1
 Name: scoring-matrices
-Version: 0.2.1
+Version: 0.2.2
 Summary: Dependency free, Cython-compatible scoring matrices to use with biological sequences.
@@ -5,0 +5,0 @@ Home-page: https://github.com/althonos/score-matrices

scoring_matrices.egg-info/PKG-INFO

 Metadata-Version: 2.1
 Name: scoring-matrices
-Version: 0.2.1
+Version: 0.2.2
 Summary: Dependency free, Cython-compatible scoring matrices to use with biological sequences.
@@ -5,0 +5,0 @@ Home-page: https://github.com/althonos/score-matrices

scoring_matrices/__init__.py

@@ -1,2 +0,2 @@
-__version__ = "0.2.1"
+__version__ = "0.2.2"
 __author__ = "Martin Larralde <[e-mail]>"
@@ -3,0 +3,0 @@ __license__ = "MIT"

scoring_matrices/lib.pyx

@@ -433,4 +433,4 @@ # distutils: language = c
         with nogil:
-            for i in range(self._nitems):
-                for j in range(i + 1, self._nitems):
+            for i in range(self._size):
+                for j in range(i + 1, self._size):
                     if _matrix[i][j] != _matrix[j][i]:
@@ -437,0 +437,0 @@ symmetric = False

scoring_matrices/tests/test_scoring_matrix.py

@@ -147,2 +147,8 @@ import pickle
         self.assertEqual(len(empty), 0)
-        self.assertFalse(bool(empty))
+        self.assertFalse(bool(empty))
+
+    def test_is_symmetric(self):
+        matrix = ScoringMatrix.from_name("PAM250")
+        self.assertTrue(matrix.is_symmetric())
+        matrix = ScoringMatrix([[1, 2, 3], [4, 5, 6], [7, 8, 9]], "ABC")
+        self.assertFalse(matrix.is_symmetric())

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Improved metrics

Total package byte prevSize

366546

0.07%

Lines of code

550

0.92%