# vollseg-napari-trackmate

[![License BSD-3](https://img.shields.io/pypi/l/vollseg-napari-trackmate.svg?color=green)](https://github.com/Kapoorlabs-CAPED/vollseg-napari-trackmate/raw/main/LICENSE)
[![PyPI](https://img.shields.io/pypi/v/vollseg-napari-trackmate.svg?color=green)](https://pypi.org/project/vollseg-napari-trackmate)
[![Python Version](https://img.shields.io/pypi/pyversions/vollseg-napari-trackmate.svg?color=green)](https://python.org)
[![codecov](https://codecov.io/gh/Kapoorlabs-CAPED/vollseg-napari-trackmate/branch/main/graph/badge.svg)](https://codecov.io/gh/Kapoorlabs-CAPED/vollseg-napari-trackmate)
[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/vollseg-napari-trackmate)](https://napari-hub.org/plugins/vollseg-napari-trackmate)

Track analysis using TrackMate xml and csv generated tracks using NapaTrackMater as the base library

----------------------------------

Elaborate documentation for users of this repository at this [documentation]

## Tutorial

- A detailed tutorial can be found at [Demo](https://youtu.be/7Yjd-Z3zJtk?si=_AksSBUJuEXbvIFM)

This [napari] plugin was generated with [Cookiecutter] using [@caped]'s [cookiecutter-napari-plugin] template.



## Installation

You can install `vollseg-napari-trackmate` via [pip]:

    pip install vollseg-napari-trackmate



To install latest development version :

    pip install git+https://github.com/Kapoorlabs-CAPED/vollseg-napari-trackmate.git


## Contributing

Contributions are very welcome. Tests can be run with [tox], please ensure
the coverage at least stays the same before you submit a pull request.

## License

Distributed under the terms of the [BSD-3] license,
"vollseg-napari-trackmate" is free and open source software

## Issues

If you encounter any problems, please [file an issue] along with a detailed description.

[napari]: https://github.com/napari/napari
[Cookiecutter]: https://github.com/audreyr/cookiecutter
[@napari]: https://github.com/napari
[@caped]: https://github.com/Kapoorlabs-CAPED/
[MIT]: http://opensource.org/licenses/MIT
[BSD-3]: http://opensource.org/licenses/BSD-3-Clause
[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt
[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt
[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0
[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt
[cookiecutter-napari-plugin]: https://github.com/Kapoorlabs-CAPED/cookiecutter-kapoorlabs-napari-plugin
[documentation]: https://kapoorlabs-caped.github.io/vollseg-napari-trackmate
[file an issue]: https://github.com/Kapoorlabs-CAPED/vollseg-napari-mtrack/issues

[napari]: https://github.com/napari/napari
[tox]: https://tox.readthedocs.io/en/latest/
[pip]: https://pypi.org/project/pip/
[PyPI]: https://pypi.org/

Track analysis using TrackMate xml and csv generated tracks using NapaTrackMater as the base library. 

vollseg-napari-trackmate

Track analysis using TrackMate xml and csv generated tracks using NapaTrackMater as the base library

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vollseg-napari-trackmate

vollseg-napari-trackmate

Tutorial

Installation

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