Add the following to your Cargo.toml
[dependencies]
aa-similarity = "0.1.0"
use aa_similarity::{Blosum65, Similarity, AminoAcid};
assert_eq!(
Blosum65::similarity(
AminoAcid::GlutamicAcid,
AminoAcid::AsparticAcid
),
2
);
aa-similarity re-exports AminoAcid from aa-name. Amino acids from an alignment can be converted from chars or string like so:
use aa_similarity::{Blosum62, Similarity, AminoAcid};
let ala = AminoAcid::try_from('A')?;
let tyr = AminoAcid::try_from('Y')?;
assert_eq!(Blosum62::similarity(ala, tyr), -2);
See: aa-name.
Source: ftp://ftp.ncbi.nih.gov/blast/matrices/
The project is maintained by Jean Manguy. Please submit a bug report or a feature request on the Github issues page.
aa-similarity is distributed under the terms of both the MIT license and the
Apache License (Version 2.0).
See LICENSE-APACHE and LICENSE-MIT for details.
FAQs
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We found that aa-similarity demonstrated a not healthy version release cadence and project activity because the last version was released a year ago. It has 1 open source maintainer collaborating on the project.
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