@gmod/faidx
Advanced tools
$ npm install --save @gmod/faidx
Operates on a readStream/writeStream
import { generateFastaIndex } from "@gmod/faidx";
const write = fs.createWriteStream("out.fa.fai");
const read = fs.createReadStream("out.fa");
await generateFastaIndex(write, read);
This package was written with funding from the NHGRI as part of the JBrowse project. If you use it in an academic project that you publish, please cite the most recent JBrowse paper, which will be linked from jbrowse.org.
MIT © Colin Diesh
FAQs
create indexed fasta files
We found that @gmod/faidx demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 6 open source maintainers collaborating on the project.
Did you know?
Socket for GitHub automatically highlights issues in each pull request and monitors the health of all your open source dependencies. Discover the contents of your packages and block harmful activity before you install or update your dependencies.
Security News
pnpm 10 blocks lifecycle scripts by default to improve security, addressing supply chain attack risks but sparking debate over compatibility and workflow changes.
Product
Socket now supports uv.lock files to ensure consistent, secure dependency resolution for Python projects and enhance supply chain security.
Research
Security News
Socket researchers have discovered multiple malicious npm packages targeting Solana private keys, abusing Gmail to exfiltrate the data and drain Solana wallets.