@gmod/faidx
Advanced tools
$ npm install --save @gmod/faidx
Operates on a readStream/writeStream
import { generateFastaIndex } from "@gmod/faidx";
const write = fs.createWriteStream("out.fa.fai");
const read = fs.createReadStream("out.fa");
await generateFastaIndex(write, read);
This package was written with funding from the NHGRI as part of the JBrowse project. If you use it in an academic project that you publish, please cite the most recent JBrowse paper, which will be linked from jbrowse.org.
MIT © Colin Diesh
FAQs
create indexed fasta files
We found that @gmod/faidx demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 6 open source maintainers collaborating on the project.
Did you know?
Socket for GitHub automatically highlights issues in each pull request and monitors the health of all your open source dependencies. Discover the contents of your packages and block harmful activity before you install or update your dependencies.
Security News
Critics call the Node.js EOL CVE a misuse of the system, sparking debate over CVE standards and the growing noise in vulnerability databases.
Security News
cURL and Go security teams are publicly rejecting CVSS as flawed for assessing vulnerabilities and are calling for more accurate, context-aware approaches.
Security News
Bun 1.2 enhances its JavaScript runtime with 90% Node.js compatibility, built-in S3 and Postgres support, HTML Imports, and faster, cloud-first performance.