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Readme
A Python client for the AGAVE 3d volume renderer
You must have AGAVE installed. On command line, run:
agave --server &
For Linux headless operation, you need to tell the Qt library to use the offscreen platform plugin:
agave -platform offscreen --server &
from agave_pyclient import AgaveRenderer
# 1. connect to the AGAVE server
r = agave_pyclient.AgaveRenderer()
# 2. tell it what data to load
r.load_data("my_favorite.ome.tiff")
# 3. set some render settings (abbreviated list here)
r.set_resolution(681, 612)
r.background_color(0, 0, 0)
r.render_iterations(128)
r.set_primary_ray_step_size(4)
r.set_secondary_ray_step_size(4)
r.set_voxel_scale(0.270833, 0.270833, 0.53)
r.exposure(0.75)
r.density(28.7678)
# 4. give the output a name
r.session("output.png")
# 5. wait for render and then save output
r.redraw()
Stable Release: pip install agave_pyclient
For full package documentation please visit allen-cell-animated.github.io/agave.
See CONTRIBUTING.md for information related to developing the code.
pip install -e .[dev]
This will install your package in editable mode with all the required development
dependencies (i.e. tox
).
make build
This will run tox
which will run all your tests in both Python 3.7
and Python 3.8 as well as linting your code.
make clean
This will clean up various Python and build generated files so that you can ensure that you are working in a clean environment.
make docs
This will generate and launch a web browser to view the most up-to-date documentation for your Python package.
Allen Institute Software License
FAQs
A Python client for the Agave 3d volume renderer
We found that agave-pyclient demonstrated a healthy version release cadence and project activity because the last version was released less than a year ago. It has 1 open source maintainer collaborating on the project.
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